Install log for 'TPmsm'

* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘TPmsm’ ...
** package ‘TPmsm’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.2.0-8) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpl3dPwO/R.INSTALL20d23334fe56d4/TPmsm/src'
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fvisibility=hidden -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c BtoTPCmsm.c -o BtoTPCmsm.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fvisibility=hidden -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c BtoTPmsm.c -o BtoTPmsm.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fvisibility=hidden -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c RngArray.c -o RngArray.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fvisibility=hidden -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c RngBoot.c -o RngBoot.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fvisibility=hidden -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c RngStream.c -o RngStream.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fvisibility=hidden -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c dgpTP.c -o dgpTP.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fvisibility=hidden -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c get.c -o get.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fvisibility=hidden -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c init.c -o init.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fvisibility=hidden -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c kmsurv.c -o kmsurv.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fvisibility=hidden -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c logistic.c -o logistic.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fvisibility=hidden -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c object.c -o object.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fvisibility=hidden -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c quantile.c -o quantile.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fvisibility=hidden -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c rseed.c -o rseed.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fvisibility=hidden -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c rthreads.c -o rthreads.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fvisibility=hidden -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c sample.c -o sample.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fvisibility=hidden -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c sort.c -o sort.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fvisibility=hidden -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c splines.c -o splines.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fvisibility=hidden -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c toTPCmsm.c -o toTPCmsm.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fvisibility=hidden -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c toTPmsm.c -o toTPmsm.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fvisibility=hidden -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c transAJ.c -o transAJ.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fvisibility=hidden -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c transIPCW1.c -o transIPCW1.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fvisibility=hidden -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c transIPCW2.c -o transIPCW2.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fvisibility=hidden -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c transKMPW1.c -o transKMPW1.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fvisibility=hidden -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c transKMPW2.c -o transKMPW2.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fvisibility=hidden -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c transKMW.c -o transKMW.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fvisibility=hidden -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c transKMW1.c -o transKMW1.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fvisibility=hidden -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c transKMW2.c -o transKMW2.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fvisibility=hidden -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c transLIN1.c -o transLIN1.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fvisibility=hidden -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c transLIN2.c -o transLIN2.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fvisibility=hidden -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c transLS.c -o transLS.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fvisibility=hidden -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c transPAJ.c -o transPAJ.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fvisibility=hidden -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c unique.c -o unique.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fvisibility=hidden -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c uniqueTP.c -o uniqueTP.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fvisibility=hidden -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c unload.c -o unload.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fvisibility=hidden -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c wikmsurv.c -o wikmsurv.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fvisibility=hidden -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c window.c -o window.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fvisibility=hidden -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c wkmsurv.c -o wkmsurv.o
gcc-14 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o TPmsm.so BtoTPCmsm.o BtoTPmsm.o RngArray.o RngBoot.o RngStream.o dgpTP.o get.o init.o kmsurv.o logistic.o object.o quantile.o rseed.o rthreads.o sample.o sort.o splines.o toTPCmsm.o toTPmsm.o transAJ.o transIPCW1.o transIPCW2.o transKMPW1.o transKMPW2.o transKMW.o transKMW1.o transKMW2.o transLIN1.o transLIN2.o transLS.o transPAJ.o unique.o uniqueTP.o unload.o wikmsurv.o window.o wkmsurv.o -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -fopenmp -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpl3dPwO/R.INSTALL20d23334fe56d4/TPmsm/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpl3dPwO/R.INSTALL20d23334fe56d4/TPmsm/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpl3dPwO/R.INSTALL20d23334fe56d4/TPmsm/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-TPmsm/00new/TPmsm/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘TPmsm’
    finding HTML links ... done
    TPmsm-package                           html  
    TPmsmOut                                html  
    as.data.frame.survTP                    html  
    bladderTP                               html  
    colonTP                                 html  
    contour.TPCmsm                          html  
    corrTP                                  html  
    dgpTP                                   html  
    heartTP                                 html  
    image.TPCmsm                            html  
    lines.TPCmsm                            html  
    lines.TPmsm                             html  
    plot.TPCmsm                             html  
    plot.TPmsm                              html  
    setPackageSeedTP                        html  
    setSeedTP                               html  
    setThreadsTP                            html  
    survTP                                  html  
    transAJ                                 html  
    transIPCW                               html  
    transKMPW                               html  
    transKMW                                html  
    transLIN                                html  
    transLS                                 html  
    transPAJ                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (TPmsm)