- using R version 4.4.1 Patched (2024-06-25 r86831)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc-13 (Debian 13.3.0-1) 13.3.0
GNU Fortran (Debian 13.3.0-1) 13.3.0
- running under: Debian GNU/Linux trixie/sid
- using session charset: UTF-8
- checking for file ‘TPCselect/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘TPCselect’ version ‘0.8.3’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking serialization versions ... OK
- checking whether package ‘TPCselect’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [0s/0s] OK
- checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
- checking whether the package can be unloaded cleanly ... [0s/0s] OK
- checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
- checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
- checking loading without being on the library search path ... [0s/1s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [6s/8s] OK
- checking Rd files ... [0s/1s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking examples ... [13s/17s] OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
TPC_pl_BIC 6.873 0.000 8.583
TPC_pl 5.404 0.025 6.925
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [11s/14s] ERROR
Running ‘testthat.R’ [10s/14s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(TPCselect)
>
> test_check("TPCselect")
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 5 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-TPC.R:25:3'): test the main functions (TPC) ──────────────────
as.vector(TPC.fit$beta) (`actual`) not equal to `truebeta` (`expected`).
`actual[1:5]`: 2.9 1.6 0.0 0.0 2.0
`expected[1:5]`: 3.0 1.5 0.0 0.0 2.0
`actual[197:200]`: 0.0 0.0 0.0 0.4
`expected[197:200]`: 0.0 0.0 0.0 0.0
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 5 ]
Error: Test failures
Execution halted
- checking PDF version of manual ... [5s/8s] OK
- checking HTML version of manual ... [0s/1s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 ERROR