* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘TESS’ ...
** this is package ‘TESS’ version ‘2.1.2’
** package ‘TESS’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpmwvQkL/R.INSTALL3ac650633888ac/TESS/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c mass_extinction_equations.cpp -o mass_extinction_equations.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o TESS.so RcppExports.o mass_extinction_equations.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpmwvQkL/R.INSTALL3ac650633888ac/TESS/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpmwvQkL/R.INSTALL3ac650633888ac/TESS/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpmwvQkL/R.INSTALL3ac650633888ac/TESS/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-TESS/00new/TESS/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘TESS’
    finding HTML links ... done
    TESS-package                            html  
    cettiidae                               html  
Rd warning: cettiidae.Rd:13: missing link ‘read.tree’
Rd warning: cettiidae.Rd:13: missing link ‘ape’
    conifers                                html  
Rd warning: conifers.Rd:13: missing link ‘read.tree’
Rd warning: conifers.Rd:13: missing link ‘ape’
    mammalia                                html  
Rd warning: mammalia.Rd:13: missing link ‘read.tree’
Rd warning: mammalia.Rd:13: missing link ‘ape’
    tess.PosteriorPrediction                html  
    tess.PosteriorPredictiveTest            html  
    tess.analysis                           html  
    tess.likelihood                         html  
    tess.likelihood.rateshift               html  
    tess.mcmc                               html  
    tess.nTaxa.expected                     html  
    tess.pathSampling                       html  
    tess.plot.multichain.diagnostics        html  
    tess.plot.output                        html  
    tess.plot.singlechain.diagnostics       html  
    tess.process.output                     html  
    tess.sim.age                            html  
    tess.sim.taxa                           html  
    tess.sim.taxa.age                       html  
    tess.steppingStoneSampling              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (TESS)