* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘TCIU’ ...
** package ‘TCIU’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.3.0-1) 13.3.0’
using Fortran compiler: ‘GNU Fortran (Debian 13.3.0-1) 13.3.0’
make[1]: Entering directory '/tmp/RtmpKm3zSw/R.INSTALL27160e9d02073/TCIU/src'
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c GLS.c -o GLS.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c RC_interface.c -o RC_interface.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c complex_Sig_gen.c -o complex_Sig_gen.o
In file included from complex_Sig_gen.c:5:
complex_Sig_gen.c: In function ‘complex_comp_alpha_ri_dep’:
array.h:10:11: warning: argument 1 value ‘18446744073709551608’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
10 | (a) = malloc((n) * sizeof *(a)); \
| ^~~~~~~~~~~~~~~~~~~~~~~~~
array.h:100:29: note: in expansion of macro ‘MAKE_1ARRAY’
100 | #define MAKE_VECTOR(a,n) MAKE_1ARRAY(a,n)
| ^~~~~~~~~~~
complex_Sig_gen.c:115:41: note: in expansion of macro ‘MAKE_VECTOR’
115 | double *d; MAKE_VECTOR(d, p);
| ^~~~~~~~~~~
In file included from complex_Sig_gen.c:2:
/usr/include/stdlib.h:672:14: note: in a call to allocation function ‘malloc’ declared here
672 | extern void *malloc (size_t __size) __THROW __attribute_malloc__
| ^~~~~~
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c complex_Sig_sig2I.c -o complex_Sig_sig2I.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c complex_smoother.c -o complex_smoother.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mat_vec.c -o mat_vec.o
mat_vec.c: In function ‘dist_max’:
mat_vec.c:77:13: warning: ‘*diff’ may be used uninitialized [-Wmaybe-uninitialized]
77 | max = diff[0];
| ~~~~^~~~~~~~~
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c registerDynamicSymbol.c -o registerDynamicSymbol.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c spatial.c -o spatial.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c spatial.filters.linear.f -o spatial.filters.linear.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c spatial_smooth.c -o spatial_smooth.o
gcc-13 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o TCIU.so GLS.o RC_interface.o complex_Sig_gen.o complex_Sig_sig2I.o complex_smoother.o mat_vec.o registerDynamicSymbol.o spatial.o spatial.filters.linear.o spatial_smooth.o -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpKm3zSw/R.INSTALL27160e9d02073/TCIU/src'
make[1]: Entering directory '/tmp/RtmpKm3zSw/R.INSTALL27160e9d02073/TCIU/src'
make[1]: Leaving directory '/tmp/RtmpKm3zSw/R.INSTALL27160e9d02073/TCIU/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-TCIU/00new/TCIU/libs
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘TCIU’
finding HTML links ... done
GaussSmoothArray html
GaussSmoothKernel html
ILT html
LT html
fmri_2dvisual html
fmri_3dvisual html
fmri_3dvisual_region html
fmri_ROI_phase1 html
fmri_ROI_phase2 html
fmri_image html
fmri_kimesurface html
fmri_post_hoc html
fmri_pval_comparison_2d html
fmri_pval_comparison_3d html
fmri_simulate_func html
fmri_stimulus_detect html
fmri_time_series html
fmri_ts_forecast html
inv_kimesurface_transform html
kimesurface_transform html
mask html
mask_dict html
mask_label html
phase1_pval html
phase2_pval html
phase3_pval html
sample_save html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (TCIU)