* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘StrathE2E2’ ...
** package ‘StrathE2E2’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.2.0-12) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpzmS2mS/R.INSTALL3e1e3fa6f3947/StrathE2E2/src'
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c StrathE2E2_ecology_model_function.c -o StrathE2E2_ecology_model_function.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c init.c -o init.o
gcc-14 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o StrathE2E2.so StrathE2E2_ecology_model_function.o init.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpzmS2mS/R.INSTALL3e1e3fa6f3947/StrathE2E2/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpzmS2mS/R.INSTALL3e1e3fa6f3947/StrathE2E2/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpzmS2mS/R.INSTALL3e1e3fa6f3947/StrathE2E2/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-StrathE2E2/00new/StrathE2E2/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘StrathE2E2’
    finding HTML links ... done
    StrathE2E2-package                      html  
    e2e_calculate_hrscale                   html  
    e2e_compare_obs                         html  
    e2e_compare_runs_bar                    html  
    e2e_compare_runs_box                    html  
    e2e_copy                                html  
    e2e_extract_hr                          html  
    e2e_extract_start                       html  
    e2e_get_parmdoc                         html  
    e2e_get_senscrit                        html  
    e2e_ls                                  html  
    e2e_merge_sens_mc                       html  
    e2e_optimize_act                        html  
    e2e_optimize_eco                        html  
    e2e_optimize_hr                         html  
    e2e_plot_biomass                        html  
    e2e_plot_catch                          html  
    e2e_plot_eco                            html  
    e2e_plot_edrivers                       html  
    e2e_plot_fdrivers                       html  
    e2e_plot_migration                      html  
    e2e_plot_opt_diagnostics                html  
    e2e_plot_sens_mc                        html  
    e2e_plot_trophic                        html  
    e2e_plot_ts                             html  
    e2e_plot_ycurve                         html  
    e2e_process_sens_mc                     html  
    e2e_read                                html  
    e2e_run                                 html  
    e2e_run_mc                              html  
    e2e_run_sens                            html  
    e2e_run_ycurve                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (StrathE2E2)