* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘SoilR’ ...
** package ‘SoilR’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘SoilR’
finding HTML links ... done
AWBmodel html
AbsoluteFractionModern-BoundFc-method html
AbsoluteFractionModern-ConstFc-method html
AbsoluteFractionModern html
AbsoluteFractionModern_from_Delta14C-matrix-method
html
AbsoluteFractionModern_from_Delta14C-numeric-method
html
AbsoluteFractionModern_from_Delta14C html
BoundFc-character-method html
BoundFc-class html
BoundFc-missing-method html
BoundFc html
BoundInFluxes-class html
BoundInFluxes html
BoundLinDecompOp-ANY-method html
BoundLinDecompOp-UnBoundLinDecompOp-method
html
BoundLinDecompOp-class html
BoundLinDecompOp html
C14Atm html
C14Atm_NH html
CenturyModel html
CenturyModel14 html
ConstFc-class html
ConstFc html
ConstInFluxes-ConstantInFluxList_by_PoolIndex-numeric-method
html
ConstInFluxes-class html
ConstInFluxes-numeric-ANY-method html
ConstInFluxes html
ConstLinDecompOp-class html
ConstLinDecompOp-matrix-missing-missing-missing-missing-method
html
ConstLinDecompOp html
ConstLinDecompOpWithLinearScalarFactor-class
html
ConstLinDecompOpWithLinearScalarFactor
html
ConstLinDecompOp_by_PoolName html
ConstantInFluxList_by_PoolIndex-ConstInFluxes-method
html
ConstantInFluxList_by_PoolIndex-class html
ConstantInFluxList_by_PoolIndex-list-method
html
ConstantInFluxList_by_PoolIndex-numeric-method
html
ConstantInFluxList_by_PoolIndex html
ConstantInFluxList_by_PoolName-class html
ConstantInFluxList_by_PoolName html
ConstantInFluxRate_by_PoolIndex-class html
ConstantInFluxRate_by_PoolName-class html
ConstantInFluxRate_by_PoolName html
ConstantInFlux_by_PoolIndex-class html
ConstantInFlux_by_PoolName-class html
ConstantInternalFluxRateList_by_PoolIndex-class
html
ConstantInternalFluxRateList_by_PoolIndex-list-method
html
ConstantInternalFluxRateList_by_PoolIndex-numeric-method
html
ConstantInternalFluxRateList_by_PoolIndex
html
ConstantInternalFluxRateList_by_PoolName-class
html
ConstantInternalFluxRateList_by_PoolName-list-method
html
ConstantInternalFluxRateList_by_PoolName
html
ConstantInternalFluxRate_by_PoolIndex-class
html
ConstantInternalFluxRate_by_PoolIndex-numeric-numeric-missing-numeric-method
html
ConstantInternalFluxRate_by_PoolIndex html
ConstantInternalFluxRate_by_PoolName-character-character-missing-numeric-method
html
ConstantInternalFluxRate_by_PoolName-class
html
ConstantInternalFluxRate_by_PoolName-missing-missing-character-numeric-method
html
ConstantInternalFluxRate_by_PoolName html
ConstantOutFluxRateList_by_PoolIndex-class
html
ConstantOutFluxRateList_by_PoolIndex-list-method
html
ConstantOutFluxRateList_by_PoolIndex-numeric-method
html
ConstantOutFluxRateList_by_PoolIndex html
ConstantOutFluxRateList_by_PoolName-class
html
ConstantOutFluxRateList_by_PoolName-list-method
html
ConstantOutFluxRateList_by_PoolName-numeric-method
html
ConstantOutFluxRateList_by_PoolName html
ConstantOutFluxRate_by_PoolIndex-class
html
ConstantOutFluxRate_by_PoolIndex-numeric-numeric-method
html
ConstantOutFluxRate_by_PoolIndex html
ConstantOutFluxRate_by_PoolName-class html
DecompOp-class html
DecompositionOperator-class html
Delta14C-BoundFc-method html
Delta14C-ConstFc-method html
Delta14C html
Delta14C_from_AbsoluteFractionModern-matrix-method
html
Delta14C_from_AbsoluteFractionModern-numeric-method
html
Delta14C_from_AbsoluteFractionModern html
Fc-class html
FcAtm.from.Dataframe html
GaudinskiModel14 html
GeneralDecompOp-DecompOp-method html
GeneralDecompOp-TimeMap-method html
GeneralDecompOp-function-method html
GeneralDecompOp-list-method html
GeneralDecompOp-matrix-method html
GeneralDecompOp html
GeneralModel html
GeneralModel_14 html
GeneralNlModel html
GeneralPoolId-character-method html
GeneralPoolId-numeric-method html
GeneralPoolId html
Graven2017 html
HarvardForest14CO2 html
Hua2013 html
Hua2021 html
ICBMModel html
ICBM_N html
InFlux html
InFluxList_by_PoolIndex-class html
InFluxList_by_PoolIndex-list-method html
InFluxList_by_PoolIndex html
InFluxList_by_PoolName-class html
InFluxList_by_PoolName-list-method html
InFluxList_by_PoolName html
InFlux_by_PoolIndex-class html
InFlux_by_PoolIndex-function-numeric-method
html
InFlux_by_PoolIndex html
InFlux_by_PoolName-class html
InFlux_by_PoolName-function-character-method
html
InFlux_by_PoolName html
InFluxes-ConstantInFluxList_by_PoolIndex-method
html
InFluxes-InFluxes-method html
InFluxes-StateIndependentInFluxList_by_PoolIndex-method
html
InFluxes-TimeMap-method html
InFluxes-class html
InFluxes-function-method html
InFluxes-list-method html
InFluxes-numeric-method html
InFluxes html
IntCal09 html
IntCal13 html
IntCal20 html
InternalFluxList_by_PoolIndex-class html
InternalFluxList_by_PoolIndex-list-method
html
InternalFluxList_by_PoolIndex html
InternalFluxList_by_PoolName-class html
InternalFluxList_by_PoolName-list-method
html
InternalFluxList_by_PoolName html
InternalFlux_by_PoolIndex-class html
InternalFlux_by_PoolIndex-function-numeric-numeric-missing-method
html
InternalFlux_by_PoolIndex html
InternalFlux_by_PoolName-class html
InternalFlux_by_PoolName-function-character-character-missing-method
html
InternalFlux_by_PoolName-function-missing-missing-character-method
html
InternalFlux_by_PoolName html
MCSim-class html
Model-class html
Model html
Model_14-class html
Model_14 html
Model_by_PoolNames-class html
Model_by_PoolNames html
NlModel-class html
OnepModel html
OnepModel14 html
OutFlux html
OutFluxList_by_PoolIndex-class html
OutFluxList_by_PoolIndex-list-method html
OutFluxList_by_PoolIndex html
OutFluxList_by_PoolName-class html
OutFluxList_by_PoolName-list-method html
OutFluxList_by_PoolName html
OutFlux_by_PoolIndex-class html
OutFlux_by_PoolIndex-function-numeric-method
html
OutFlux_by_PoolIndex html
OutFlux_by_PoolName-class html
OutFlux_by_PoolName-function-character-method
html
OutFlux_by_PoolName html
ParallelModel html
PoolConnection_by_PoolIndex-ANY-ANY-missing-method
html
PoolConnection_by_PoolIndex-class html
PoolConnection_by_PoolIndex-missing-missing-character-method
html
PoolConnection_by_PoolIndex html
PoolConnection_by_PoolName-ANY-ANY-missing-method
html
PoolConnection_by_PoolName-class html
PoolConnection_by_PoolName html
PoolId-class html
PoolIndex-PoolIndex-method html
PoolIndex-PoolName-method html
PoolIndex-character-method html
PoolIndex-class html
PoolIndex-numeric-method html
PoolIndex html
PoolName-PoolIndex-method html
PoolName-PoolName-method html
PoolName-character-method html
PoolName-class html
PoolName html
RespirationCoefficients html
RothCModel html
SHCal20 html
ScalarTimeMap-class html
ScalarTimeMap-data.frame-missing-missing-missing-missing-method
html
ScalarTimeMap-function-missing-missing-missing-missing-method
html
ScalarTimeMap-function-numeric-numeric-missing-missing-method
html
ScalarTimeMap-missing-missing-missing-missing-numeric-method
html
ScalarTimeMap-missing-missing-missing-numeric-numeric-method
html
ScalarTimeMap html
SeriesLinearModel html
SeriesLinearModel14 html
SoilR-package html
SoilR.F0.new html
StateDependentInFluxVector-class html
StateIndependentInFluxList_by_PoolIndex-class
html
StateIndependentInFluxList_by_PoolIndex-list-method
html
StateIndependentInFluxList_by_PoolIndex
html
StateIndependentInFluxList_by_PoolName
html
StateIndependentInFlux_by_PoolIndex-class
html
SymbolicModel_by_PoolNames-class html
ThreepFeedbackModel html
ThreepFeedbackModel14 html
ThreepParallelModel html
ThreepParallelModel14 html
ThreepSeriesModel html
ThreepSeriesModel14 html
ThreepairMMmodel html
TimeMap-TimeMap-ANY-ANY-ANY-ANY-method
html
TimeMap-class html
TimeMap-data.frame-missing-missing-missing-missing-method
html
TimeMap-function-missing-missing-missing-missing-method
html
TimeMap-function-numeric-numeric-missing-missing-method
html
TimeMap-list-missing-missing-missing-missing-method
html
TimeMap-missing-missing-missing-numeric-array-method
html
TimeMap-missing-missing-missing-numeric-list-method
html
TimeMap-missing-missing-missing-numeric-matrix-method
html
TimeMap-missing-missing-missing-numeric-numeric-method
html
TimeMap html
TimeMap.from.Dataframe html
TimeMap.new html
TimeRangeIntersection html
TransportDecompositionOperator-class html
TwopFeedbackModel html
TwopFeedbackModel14 html
TwopMMmodel html
TwopParallelModel html
TwopParallelModel14 html
TwopSeriesModel html
TwopSeriesModel14 html
UnBoundInFluxes-class html
UnBoundInFluxes-function-method html
UnBoundInFluxes html
UnBoundLinDecompOp-class html
UnBoundLinDecompOp-function-method html
UnBoundLinDecompOp html
UnBoundNonLinDecompOp-class html
UnBoundNonLinDecompOp-function-missing-missing-missing-method
html
UnBoundNonLinDecompOp-missing-vector-vector-numeric-method
html
UnBoundNonLinDecompOp html
UnBoundNonLinDecompOp_by_PoolNames-class
html
UnBoundNonLinDecompOp_by_PoolNames html
Yasso07Model html
YassoModel html
add_plot-TimeMap-method html
add_plot html
as.character-TimeMap-method html
as.numeric-InFluxList_by_PoolName-method
html
as.numeric-InternalFluxList_by_PoolName-method
html
as.numeric-InternalFlux_by_PoolName-method
html
as.numeric-OutFluxList_by_PoolName-method
html
availableParticleProperties-MCSim-method
html
availableParticleProperties html
availableParticleSets-MCSim-method html
availableParticleSets html
availableResidentSets-MCSim-method html
availableResidentSets html
bacwaveModel html
bind.C14curves html
by_PoolIndex-ConstantInFluxRate_by_PoolName-ANY-ANY-method
html
by_PoolIndex-ConstantInternalFluxRateList_by_PoolName-ANY-ANY-method
html
by_PoolIndex-ConstantInternalFluxRate_by_PoolName-ANY-ANY-method
html
by_PoolIndex-ConstantOutFluxRateList_by_PoolName-ANY-ANY-method
html
by_PoolIndex-ConstantOutFluxRate_by_PoolName-ANY-ANY-method
html
by_PoolIndex-InFluxList_by_PoolName-character-character-method
html
by_PoolIndex-InFlux_by_PoolName-character-character-method
html
by_PoolIndex-InternalFluxList_by_PoolName-character-character-method
html
by_PoolIndex-InternalFlux_by_PoolName-character-character-method
html
by_PoolIndex-OutFluxList_by_PoolName-character-character-method
html
by_PoolIndex-OutFlux_by_PoolName-character-character-method
html
by_PoolIndex-PoolConnection_by_PoolName-ANY-ANY-method
html
by_PoolIndex-function-character-character-method
html
by_PoolIndex html
by_PoolName-ConstantInFluxList_by_PoolIndex-method
html
by_PoolName-ConstantInFluxRate_by_PoolIndex-method
html
by_PoolName-ConstantInFlux_by_PoolIndex-method
html
by_PoolName-ConstantInternalFluxRateList_by_PoolIndex-method
html
by_PoolName-ConstantOutFluxRateList_by_PoolIndex-method
html
by_PoolName-ConstantOutFluxRate_by_PoolIndex-method
html
by_PoolName html
cash-NlModel-method html
check_duplicate_pool_names html
check_id_length html
check_pool_ids-PoolConnection_by_PoolIndex-integer-method
html
check_pool_ids html
computeResults-MCSim-method html
computeResults html
cycling html
deSolve.lsoda.wrapper html
eCO2 html
entropyRatePerJump html
entropyRatePerTime html
euler html
example.2DBoundInFluxesFromFunction html
example.2DBoundLinDecompOpFromFunction
html
example.2DConstFc.Args html
example.2DConstInFluxesFromVector html
example.2DGeneralDecompOpArgs html
example.2DInFluxes.Args html
example.2DUnBoundLinDecompOpFromFunction
html
example.ConstlinDecompOpFromMatrix html
example.Time2DArrayList html
example.Time3DArrayList html
example.TimeMapFromArray html
example.nestedTime2DMatrixList html
fT.Arrhenius html
fT.Century1 html
fT.Century2 html
fT.Daycent1 html
fT.Daycent2 html
fT.Demeter html
fT.KB html
fT.LandT html
fT.Q10 html
fT.RothC html
fT.Standcarb html
fT.linear html
fW.Candy html
fW.Century html
fW.Daycent1 html
fW.Daycent2 html
fW.Demeter html
fW.Gompertz html
fW.Moyano html
fW.RothC html
fW.Skopp html
fW.Standcarb html
from_integer_flux_lists_with_defaults html
getAccumulatedRelease-Model-method html
getAccumulatedRelease html
getC-Model-method html
getC-Model_by_PoolNames-method html
getC-NlModel-method html
getC html
getC14-Model_14-method html
getC14 html
getCompartmentalMatrixFunc-BoundLinDecompOp-method
html
getCompartmentalMatrixFunc-ConstLinDecompOp-method
html
getCompartmentalMatrixFunc-TransportDecompositionOperator-method
html
getCompartmentalMatrixFunc-UnBoundNonLinDecompOp-method
html
getCompartmentalMatrixFunc html
getConstLinDecompOp-ConstLinDecompOpWithLinearScalarFactor-method
html
getConstLinDecompOp html
getConstantCompartmentalMatrix-ConstLinDecompOp-method
html
getConstantCompartmentalMatrix-ConstLinDecompOpWithLinearScalarFactor-method
html
getConstantCompartmentalMatrix html
getConstantInFluxVector-ConstInFluxes-method
html
getConstantInFluxVector html
getConstantInternalFluxRateList_by_PoolIndex-ConstLinDecompOp-method
html
getConstantInternalFluxRateList_by_PoolIndex
html
getConstantOutFluxRateList_by_PoolIndex-ConstLinDecompOp-method
html
getConstantOutFluxRateList_by_PoolIndex
html
getCumulativeC-NlModel-method html
getCumulativeC html
getDecompOp-Model-method html
getDecompOp-NlModel-method html
getDecompOp html
getDotOut-TransportDecompositionOperator-method
html
getDotOut html
getF14-Model_14-method html
getF14 html
getF14C-Model_14-method html
getF14C html
getF14R-Model_14-method html
getF14R html
getFormat-Fc-method html
getFormat html
getFunctionDefinition-ConstInFluxes-method
html
getFunctionDefinition-ConstLinDecompOp-method
html
getFunctionDefinition-ConstLinDecompOpWithLinearScalarFactor-method
html
getFunctionDefinition-DecompositionOperator-method
html
getFunctionDefinition-InFluxList_by_PoolIndex-method
html
getFunctionDefinition-InFluxList_by_PoolName-method
html
getFunctionDefinition-StateDependentInFluxVector-method
html
getFunctionDefinition-TimeMap-method html
getFunctionDefinition-TransportDecompositionOperator-method
html
getFunctionDefinition-UnBoundInFluxes-method
html
getFunctionDefinition-UnBoundLinDecompOp-method
html
getFunctionDefinition html
getInFluxes-Model-method html
getInFluxes-NlModel-method html
getInFluxes html
getInitialValues-NlModel-method html
getInitialValues html
getLinearScaleFactor-ConstLinDecompOpWithLinearScalarFactor-method
html
getLinearScaleFactor html
getMeanTransitTime-ConstLinDecompOp-method
html
getMeanTransitTime html
getNumberOfPools-MCSim-method html
getNumberOfPools-NlModel-method html
getNumberOfPools-TransportDecompositionOperator-method
html
getNumberOfPools html
getOutputFluxes-NlModel-method html
getOutputFluxes html
getOutputReceivers-TransportDecompositionOperator-numeric-method
html
getOutputReceivers html
getParticleMonteCarloSimulator-NlModel-method
html
getParticleMonteCarloSimulator html
getReleaseFlux-Model-method html
getReleaseFlux-Model_by_PoolNames-method
html
getReleaseFlux-NlModel-method html
getReleaseFlux html
getReleaseFlux14-Model_14-method html
getReleaseFlux14 html
getRightHandSideOfODE-Model-method html
getRightHandSideOfODE-Model_by_PoolNames-method
html
getRightHandSideOfODE html
getSolution-Model_by_PoolNames-method html
getSolution html
getTimeRange-ConstInFluxes-method html
getTimeRange-ConstLinDecompOp-method html
getTimeRange-ConstLinDecompOpWithLinearScalarFactor-method
html
getTimeRange-DecompositionOperator-method
html
getTimeRange-TimeMap-method html
getTimeRange-UnBoundInFluxes-method html
getTimeRange-UnBoundLinDecompOp-method
html
getTimeRange html
getTimes-Model-method html
getTimes-Model_by_PoolNames-method html
getTimes-NlModel-method html
getTimes html
getTransferCoefficients-NlModel-method
html
getTransferCoefficients-TransportDecompositionOperator-method
html
getTransferCoefficients html
getTransferMatrix html
getTransferMatrixFunc-TransportDecompositionOperator-method
html
getTransferMatrixFunc html
getTransitTimeDistributionDensity-ConstLinDecompOp-method
html
getTransitTimeDistributionDensity html
getValues-ConstFc-method html
getValues html
incubation_experiment html
initialize-ConstLinDecompOp-method html
initialize-DecompositionOperator-method
html
initialize-MCSim-method html
initialize-Model-method html
initialize-Model_14-method html
initialize-Model_by_PoolNames-method html
initialize-NlModel-method html
initialize-TimeMap-method html
initialize-TransportDecompositionOperator-method
html
initialize-UnBoundInFluxes-method html
initialize-UnBoundLinDecompOp-method html
linearScalarModel html
linesCPool html
listProduct html
no_outflux_warning html
pathEntropy html
plot-MCSim-method html
plot-Model-method html
plot-Model_by_PoolNames-method html
plot-NlModel-method html
plot-TimeMap-method html
plotC14Pool html
plotCPool html
plotPoolGraph-SymbolicModel_by_PoolNames-method
html
plotPoolGraph html
plotPoolGraphFromTupleLists html
predefinedModels html
print-NlModel-method html
show-NlModel-method html
state_variable_names html
sub-Model-character-missing-missing-method
html
sub-NlModel-character-ANY-ANY-method html
sub-sub-MCSim-method html
sub-subset-MCSim-method html
systemAge html
transitTime html
turnoverFit html
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SoilR)