* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘SigTree’ ...
** package ‘SigTree’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpZcyCqS/R.INSTALL1fbe4a6a241205/SigTree/src'
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c SigTree.c -o SigTree.o
gcc-14 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o SigTree.so SigTree.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpZcyCqS/R.INSTALL1fbe4a6a241205/SigTree/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpZcyCqS/R.INSTALL1fbe4a6a241205/SigTree/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpZcyCqS/R.INSTALL1fbe4a6a241205/SigTree/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-SigTree/00new/SigTree/libs
** R
** inst
** byte-compile and prepare package for lazy loading
Found more than one class "Annotated" in cache; using the first, from namespace 'RNeXML'
Also defined by ‘S4Vectors’
Found more than one class "Annotated" in cache; using the first, from namespace 'RNeXML'
Also defined by ‘S4Vectors’
Found more than one class "Annotated" in cache; using the first, from namespace 'RNeXML'
Also defined by ‘S4Vectors’
Found more than one class "Annotated" in cache; using the first, from namespace 'RNeXML'
Also defined by ‘S4Vectors’
Found more than one class "Annotated" in cache; using the first, from namespace 'RNeXML'
Also defined by ‘S4Vectors’
Found more than one class "Annotated" in cache; using the first, from namespace 'RNeXML'
Also defined by ‘S4Vectors’
** help
*** installing help indices
  converting help for package ‘SigTree’
    finding HTML links ... done
    SigTree-package                         html  
    SigTree.other                           html  
    adonis.tree                             html  
    export.figtree                          html  
    export.inherit                          html  
    p2.p1                                   html  
    plotSigTree                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Found more than one class "Annotated" in cache; using the first, from namespace 'RNeXML'
Also defined by ‘S4Vectors’
Found more than one class "Annotated" in cache; using the first, from namespace 'RNeXML'
Also defined by ‘S4Vectors’
Found more than one class "Annotated" in cache; using the first, from namespace 'RNeXML'
Also defined by ‘S4Vectors’
Found more than one class "Annotated" in cache; using the first, from namespace 'RNeXML'
Also defined by ‘S4Vectors’
Found more than one class "Annotated" in cache; using the first, from namespace 'RNeXML'
Also defined by ‘S4Vectors’
Found more than one class "Annotated" in cache; using the first, from namespace 'RNeXML'
Also defined by ‘S4Vectors’
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
Found more than one class "Annotated" in cache; using the first, from namespace 'RNeXML'
Also defined by ‘S4Vectors’
Found more than one class "Annotated" in cache; using the first, from namespace 'RNeXML'
Also defined by ‘S4Vectors’
Found more than one class "Annotated" in cache; using the first, from namespace 'RNeXML'
Also defined by ‘S4Vectors’
Found more than one class "Annotated" in cache; using the first, from namespace 'RNeXML'
Also defined by ‘S4Vectors’
Found more than one class "Annotated" in cache; using the first, from namespace 'RNeXML'
Also defined by ‘S4Vectors’
Found more than one class "Annotated" in cache; using the first, from namespace 'RNeXML'
Also defined by ‘S4Vectors’
** testing if installed package keeps a record of temporary installation path
* DONE (SigTree)