* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘SeqDetect’ ...
** package ‘SeqDetect’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.3.0-1) 13.3.0’
using C++14
make[1]: Entering directory '/tmp/RtmpASbRnV/R.INSTALL1d658c7e35918f/SeqDetect/src'
g++-13 -std=gnu++14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I./ETT -fpic  -g -O2 -Wall -pedantic -mtune=native   -c ETT/ETT.cpp -o ETT/ETT.o
g++-13 -std=gnu++14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I./ETT -fpic  -g -O2 -Wall -pedantic -mtune=native   -c ETT/ETT_Decay.cpp -o ETT/ETT_Decay.o
g++-13 -std=gnu++14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I./ETT -fpic  -g -O2 -Wall -pedantic -mtune=native   -c ETT/ETT_Mappers.cpp -o ETT/ETT_Mappers.o
g++-13 -std=gnu++14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I./ETT -fpic  -g -O2 -Wall -pedantic -mtune=native   -c ETT/ETT_Utils.cpp -o ETT/ETT_Utils.o
g++-13 -std=gnu++14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I./ETT -fpic  -g -O2 -Wall -pedantic -mtune=native   -c ETT/ETT_Wrapper.cpp -o ETT/ETT_Wrapper.o
g++-13 -std=gnu++14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I./ETT -fpic  -g -O2 -Wall -pedantic -mtune=native   -c ETT_Exports.cpp -o ETT_Exports.o
g++-13 -std=gnu++14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I./ETT -fpic  -g -O2 -Wall -pedantic -mtune=native   -c ETT_R.cpp -o ETT_R.o
g++-13 -std=gnu++14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I./ETT -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++14 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o SeqDetect.so ETT/ETT.o ETT/ETT_Decay.o ETT/ETT_Mappers.o ETT/ETT_Utils.o ETT/ETT_Wrapper.o ETT_Exports.o ETT_R.o RcppExports.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpASbRnV/R.INSTALL1d658c7e35918f/SeqDetect/src'
make[1]: Entering directory '/tmp/RtmpASbRnV/R.INSTALL1d658c7e35918f/SeqDetect/src'
make[1]: Leaving directory '/tmp/RtmpASbRnV/R.INSTALL1d658c7e35918f/SeqDetect/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-SeqDetect/00new/SeqDetect/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘SeqDetect’
    finding HTML links ... done
    HSC_PC                                  html  
    HSC_PC_Attribute                        html  
    HSC_PC_Binning                          html  
    HSC_PC_None                             html  
    HSC_PP                                  html  
    HybridSequenceClassifier-class          html  
    bpi_challenge_2019_test1                html  
    c_to_string                             html  
    classify                                html  
    cleanKeys,HybridSequenceClassifier-method
                                            html  
    clone,HybridSequenceClassifier-method   html  
    compressMachines,HybridSequenceClassifier-method
                                            html  
    deserializeFromList                     html  
    getMachineIdentifiers,HybridSequenceClassifier-method
                                            html  
    induceSubmachine,HybridSequenceClassifier-method
                                            html  
    mergeMachines,HybridSequenceClassifier-method
                                            html  
    plotMachines,HybridSequenceClassifier-method
                                            html  
    preprocess                              html  
    printMachines,HybridSequenceClassifier-method
                                            html  
    process,HybridSequenceClassifier-method
                                            html  
    sales_dataset_test                      html  
    sepsis_dataset_test                     html  
    serialize,HybridSequenceClassifier-method
                                            html  
    serializeToList,HybridSequenceClassifier-method
                                            html  
    setInputDefinitions,HybridSequenceClassifier-method
                                            html  
    setOutputPattern,HybridSequenceClassifier-method
                                            html  
    setPreclassifier,HybridSequenceClassifier-method
                                            html  
    setPreprocessor,HybridSequenceClassifier-method
                                            html  
    synthetic_test_agenda                   html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SeqDetect)