* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’ * installing *source* package ‘SPECIES’ ... ** package ‘SPECIES’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using Fortran compiler: ‘GNU Fortran (Debian 14.2.0-16) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpv8WxPP/R.INSTALL280cac3b54f2c9/SPECIES/src' gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c PPCG.f90 -o PPCG.o gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c WLunpmle.f90 -o WLunpmle.o gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c norrispollock.f90 -o norrispollock.o norrispollock.f90:108:80: 108 | like=like+lgam(SUM(n1(2:(t+1)))+n00+1)-lgam(n00+1)-lgam(SUM(n1(2:(t+1)))+1) | ^ Warning: ‘n00’ may be used uninitialized [-Wmaybe-uninitialized] norrispollock.f90:67:42: 67 | DOUBLE PRECISION like,tempprob,lgam,n00, untrunPmix | ^ note: ‘n00’ was declared here gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c pnpmle.f90 -o pnpmle.o gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c shared.f90 -o shared.o shared.f90:209:62: 209 | IF (lambda1==0 .OR. lambda1<0 .OR. lambda1>100 .OR. sum_b .EQ. 0.D0) THEN | ^ Warning: ‘sum_b’ may be used uninitialized [-Wmaybe-uninitialized] shared.f90:148:36: 148 | DOUBLE PRECISION n(50),sum_a,sum_b,Etol,z(t,noZeroP),d1,d2 | ^ note: ‘sum_b’ was declared here gcc-14 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o SPECIES.so PPCG.o WLunpmle.o norrispollock.o pnpmle.o shared.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpv8WxPP/R.INSTALL280cac3b54f2c9/SPECIES/src' make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpv8WxPP/R.INSTALL280cac3b54f2c9/SPECIES/src' make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpv8WxPP/R.INSTALL280cac3b54f2c9/SPECIES/src' installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-SPECIES/00new/SPECIES/libs ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘SPECIES’ finding HTML links ... done ChaoBunge html ChaoLee1992 html EST html SPECIES.package html butterfly html chao1984 html cottontail html insects html jackknife html microbial html pcg html pnpmle html traffic html unpmle html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SPECIES)