• using R version 4.4.2 Patched (2024-12-26 r87469)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-14 (Debian 14.2.0-8) 14.2.0     GNU Fortran (Debian 14.2.0-8) 14.2.0
• running under: Debian GNU/Linux trixie/sid
• using session charset: UTF-8
• checking for file ‘SIMICO/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘SIMICO’ version ‘0.2.0’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘SIMICO’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [3s/4s] OK
• checking whether the package can be loaded with stated dependencies ... [2s/3s] OK
• checking whether the package can be unloaded cleanly ... [2s/3s] OK
• checking whether the namespace can be loaded with stated dependencies ... [2s/3s] OK
• checking whether the namespace can be unloaded cleanly ... [3s/5s] OK
• checking loading without being on the library search path ... [3s/3s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [17s/23s] OK
• checking Rd files ... [0s/1s] NOTE checkRd: (-1) fd_term.Rd:4: Lost braces; missing escapes or markup?      4 | d/d_{theta_l}        | ^ checkRd: (-1) gamma_fd.Rd:4: Lost braces; missing escapes or markup?      4 | d/d_{gamma_l}        | ^ checkRd: (-1) gamma_off.Rd:4: Lost braces; missing escapes or markup?      4 | d^2/d_{gamma_l}d{gamma_m}        | ^ checkRd: (-1) gamma_off.Rd:4: Lost braces      4 | d^2/d_{gamma_l}d{gamma_m}        | ^ checkRd: (-1) gamma_off.Rd:7: Lost braces; missing escapes or markup?      7 | Calculates the [off-diagonal] Information matrix term for I_{gamma gamma} with respect to outcome l and outcome m.        | ^ checkRd: (-1) gamma_on.Rd:4: Lost braces; missing escapes or markup?      4 | d^2/d_{gamma_l}d{gamma_l}        | ^ checkRd: (-1) gamma_on.Rd:4: Lost braces      4 | d^2/d_{gamma_l}d{gamma_l}        | ^ checkRd: (-1) gamma_on.Rd:7: Lost braces; missing escapes or markup?      7 | Calculates the [on-diagonal] Information matrix term for I_{gamma gamma} with respect to outcome l.        | ^ checkRd: (-1) gammasigma.Rd:4: Lost braces; missing escapes or markup?      4 | d^2/d_{gamma_l}d{sigma^2}        | ^ checkRd: (-1) gammasigma.Rd:4: Lost braces      4 | d^2/d_{gamma_l}d{sigma^2}        | ^ checkRd: (-1) gammasigma.Rd:7: Lost braces; missing escapes or markup?      7 | Calculates the Information matrix term of I_{eta gamma} for one outcome of interest l.        | ^ checkRd: (-1) gammatheta.Rd:4: Lost braces; missing escapes or markup?      4 | d^2/d_{gamma_k}d{theta_k}        | ^ checkRd: (-1) gammatheta.Rd:4: Lost braces      4 | d^2/d_{gamma_k}d{theta_k}        | ^ checkRd: (-1) gammatheta.Rd:7: Lost braces; missing escapes or markup?      7 | Calculates the Information matrix term of I_{eta gamma} for outcome k.        | ^ checkRd: (-1) gammatheta_off.Rd:4: Lost braces; missing escapes or markup?      4 | d^2/d_{gamma_l}d{theta_m}        | ^ checkRd: (-1) gammatheta_off.Rd:4: Lost braces      4 | d^2/d_{gamma_l}d{theta_m}        | ^ checkRd: (-1) gammatheta_off.Rd:7: Lost braces; missing escapes or markup?      7 | Calculates the Information matrix term of I_{eta gamma} for outcomes l and m        | ^ checkRd: (-1) haz_left.Rd:4: Lost braces; missing escapes or markup?      4 | H_{ik}(L_{ik})        | ^ checkRd: (-1) haz_left.Rd:4: Lost braces; missing escapes or markup?      4 | H_{ik}(L_{ik})        | ^ checkRd: (-1) haz_right.Rd:4: Lost braces; missing escapes or markup?      4 | H_{ik}(R_{ik})        | ^ checkRd: (-1) haz_right.Rd:4: Lost braces; missing escapes or markup?      4 | H_{ik}(R_{ik})        | ^ checkRd: (-1) sd_off.Rd:4: Lost braces; missing escapes or markup?      4 | d^2/d_{theta_k}d{sigma^2}        | ^ checkRd: (-1) sd_off.Rd:4: Lost braces      4 | d^2/d_{theta_k}d{sigma^2}        | ^ checkRd: (-1) sd_off.Rd:7: Lost braces; missing escapes or markup?      7 | Calculates the Information matrix term of I_{theta sigma^2} for outcomes l and m.        | ^ checkRd: (-1) sd_on.Rd:4: Lost braces      4 | d^2/d{sigma^2}^2        | ^ checkRd: (-1) sd_on.Rd:7: Lost braces; missing escapes or markup?      7 | Calculates the Information matrix term of I_{sigma^2 sigma^2} for outcome l.        | ^ checkRd: (-1) simico_out.Rd:17: Lost braces; missing escapes or markup?     17 | \item{Itt}{I_{theta theta} - Information matrix of theta.}        | ^ checkRd: (-1) ss_fd.Rd:4: Lost braces; missing escapes or markup?      4 | d/d_{sigma^2}        | ^ checkRd: (-1) ss_sd.Rd:4: Lost braces; missing escapes or markup?      4 | d^2/d_{sigma^2}^2        | ^ checkRd: (-1) st_off.Rd:4: Lost braces; missing escapes or markup?      4 | d^2/d_{theta_l}d{sigma^2}        | ^ checkRd: (-1) st_off.Rd:4: Lost braces      4 | d^2/d_{theta_l}d{sigma^2}        | ^ checkRd: (-1) st_off.Rd:7: Lost braces; missing escapes or markup?      7 | Calculates the Information matrix term of I_{eta theta} for one outcome of interest l.        | ^ checkRd: (-1) surv_diff.Rd:4: Lost braces; missing escapes or markup?      4 | S_{ik}(L_{ik}) - S_{ik}(R_{ik})        | ^ checkRd: (-1) surv_diff.Rd:4: Lost braces; missing escapes or markup?      4 | S_{ik}(L_{ik}) - S_{ik}(R_{ik})        | ^ checkRd: (-1) surv_diff.Rd:4: Lost braces; missing escapes or markup?      4 | S_{ik}(L_{ik}) - S_{ik}(R_{ik})        | ^ checkRd: (-1) surv_diff.Rd:4: Lost braces; missing escapes or markup?      4 | S_{ik}(L_{ik}) - S_{ik}(R_{ik})        | ^ checkRd: (-1) surv_left.Rd:4: Lost braces; missing escapes or markup?      4 | S_{ik}(L_{ik})        | ^ checkRd: (-1) surv_left.Rd:4: Lost braces; missing escapes or markup?      4 | S_{ik}(L_{ik})        | ^ checkRd: (-1) surv_right.Rd:4: Lost braces; missing escapes or markup?      4 | S_{ik}(R_{ik})        | ^ checkRd: (-1) surv_right.Rd:4: Lost braces; missing escapes or markup?      4 | S_{ik}(R_{ik})        | ^
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [12s/16s] OK Examples with CPU (user + system) or elapsed time > 5s            user system elapsed simico_out 5.53 0.125 7.276
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [203s/261s] OK
• checking PDF version of manual ... [5s/6s] OK
• checking HTML version of manual ... [1s/2s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 NOTE