* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’ * installing *source* package ‘R.utils’ ... ** package ‘R.utils’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading Warning in setGenericS3.default(name, export = exportGeneric, envir = envir, : Renamed the preexisting function warnings to warnings.default, which was defined in environment R.utils. Warning in setGenericS3.default("use") : Renamed the preexisting function use to use.default, which was defined in environment R.utils. Warning in setMethodS3.default("use", "default", function(pkg = "R.utils", : Method already existed and was overwritten: use.default ** help *** installing help indices converting help for package ‘R.utils’ finding HTML links ... done 000.Last.lib html Arguments html Assert html FileProgressBar html GString-class html Java html LComments html MultiVerbose html Non-documented_objects html NullVerbose html Options html ProgressBar html R.utils-package html Settings html SmartComments html Sys.readlink2 html System html TextStatusBar html TimeoutException html finding level-2 HTML links ... done VComments html Verbose html addFinalizerToLast html as.character.GString html as.character.Options html as.character.ProgressBar html as.character.Verbose html as.double.Verbose html as.list.MultiVerbose html as.list.Options html as.logical.Verbose html asByte.Java html asInt.Java html asLong.Java html asShort.Java html attachLocally.list html callHooks html callHooks.function html capitalize html capture.Verbose html captureOutput html cat.Verbose html check.Assert html cleanup.FileProgressBar html cmdArgs html cmdArgsCall html colClasses html commandArgs html compile.SmartComments html compressFile html compressPDF html convertComment.SmartComments html convertComment.VComments html copyDirectory html copyFile html countLines html createFileAtomically html createLink html createWindowsShortcut html currentTimeMillis.System html dataFrame html detachPackage html dimNALT_- html displayCode html doCall html downloadFile.character html draw.density html eget html egsub html enter.Verbose html env html equals.Options html equals.Verbose html evaluate.GString html evaluate.Verbose html exit.Verbose html extract.array html file.info2 html fileAccess html filePath html finalizeSession html findFiles html findGhostscript.System html findGraphicsDevice.System html findSettings.Settings html findSourceTraceback html flush.TextStatusBar html format.binmode html gcDLLs html gcat html getAbsolutePath html getBarString.ProgressBar html getBuiltinDate.GString html getBuiltinDatetime.GString html getBuiltinHostname.GString html getBuiltinOs.GString html getBuiltinPid.GString html getBuiltinRhome.GString html getBuiltinRversion.GString html getBuiltinTime.GString html getBuiltinUsername.GString html getCharacters.Arguments html getDoubles.Arguments html getEnvironment.Arguments html getFilename.Arguments html getHostname.System html getIndices.Arguments html getInstanceOf.Arguments html getIntegers.Arguments html getLabel.TextStatusBar html getLeaves.Options html getLoadedPathname.Settings html getLogicals.Arguments html getMessage.TimeoutException html getNumerics.Arguments html getOption.Options html getParent html getRaw.GString html getReadablePathname.Arguments html getReadablePathnames.Arguments html getRegularExpression.Arguments html getRelativePath html getThreshold.Verbose html getTimestampFormat.Verbose html getUsername.System html getVariableValue.GString html getVector.Arguments html getVerbose.Arguments html getWritablePathname.Arguments html gstring html hasOption.Options html hasUrlProtocol html header.Verbose html hpaste html hsize html inAnyInterval.numeric html increase.ProgressBar html inheritsFrom.Assert html insert html installPackages html intToBin html intervalsToSeq.matrix html isAbsolutePath html isDirectory html isDone.ProgressBar html isEof.connection html isFile html isMatrix.Assert html isModified.Settings html isOn.NullVerbose html isOn.Verbose html isOpen.character html isPackageInstalled html isPackageLoaded html isReplicated html isScalar.Assert html isSingle html isUrl html isVector.Assert html isVisible.NullVerbose html isVisible.Verbose html isZero html lastModified html less.Verbose html listDirectory html loadAnywhere.Settings html loadObject html loadToEnv html mapToIntervals.numeric html mergeIntervals.numeric html mkdirs html more.Verbose html mout html moveInSearchPath html mpager html names.Options html nbrOfOptions.Options html newline.TextStatusBar html newline.Verbose html nullfile html off.Verbose html on.Verbose html onGarbageCollect html onSessionExit html openBrowser.System html parse.GString html parse.SmartComments html parseDebian.System html patchCode html popBackupFile html popMessage.TextStatusBar html popTemporaryFile html print.GString html print.Verbose html printWarnings.Verbose html printf html printf.Verbose html promptAndSave.Settings html pushBackupFile html pushState.Verbose html pushTemporaryFile html queryRCmdCheck html readBinFragments html readByte.Java html readInt.Java html readRdHelp html readShort.Java html readTable html readTableIndex html readUTF.Java html readWindowsShellLink html readWindowsShortcut html reassignInPackage html removeDirectory html renameFile html resample html reset.ProgressBar html reset.SmartComments html reset.VComments html ruler.Verbose html saveAnywhere.Settings html saveObject html seqToHumanReadable html seqToIntervals html setDefaultLevel.Verbose html setLabel.TextStatusBar html setLabels.TextStatusBar html setMaxValue.ProgressBar html setOption.Options html setOption html setProgress.ProgressBar html setStepLength.ProgressBar html setThreshold.Verbose html setTicks.ProgressBar html setTimestampFormat.Verbose html setValue.ProgressBar html shell.exec2 html sourceDirectory html sourceTo html splitByPattern html stext html str.Options html str.Verbose html subplots html summary.Verbose html swapXY.density html systemR html tempvar html timestamp.Verbose html timestampOn.Verbose html tmpfile html toCamelCase html toUrl html touchFile html unwrap.array html update.FileProgressBar html update.ProgressBar html update.TextStatusBar html updateLabels.TextStatusBar html use html useRepos html validate.SmartComments html validate.VComments html whichVector.logical html withCapture html withLocale html withOptions html withRepos html withSeed html withSink html withTimeout html wrap.array html writeBinFragments html writeByte.Java html writeDataFrame.data.frame html writeInt.Java html writeRaw.MultiVerbose html writeRaw.NullVerbose html writeRaw.Verbose html writeShort.Java html writeUTF.Java html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (R.utils)