* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘Plasmidprofiler’ ...
** package ‘Plasmidprofiler’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** exec
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘Plasmidprofiler’
    finding HTML links ... done
    amr_positives                           html  
    amr_presence                            html  
    blast_parser                            html  
    blastdata                               html  
    combine_results                         html  
    create_grob                             html  
    create_plotly                           html  
    define_colours                          html  
    file_cacher                             html  
    main                                    html  
    minmax                                  html  
    normalize                               html  
    order_report                            html  
    plot_heatmap                            html  
    read_blast                              html  
    read_srst2                              html  
    report                                  html  
    save_files                              html  
    srst2data                               html  
    subsampler                              html  
    tree_maker                              html  
    zetner_score                            html  
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Plasmidprofiler)