* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘Peptides’ ...
** package ‘Peptides’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.2.0-1) 14.2.0’
using C++ compiler: ‘g++-14 (Debian 14.2.0-1) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpx60Q7Z/R.INSTALL3c7491c342559/Peptides/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c charge_pI.cpp -o charge_pI.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c init.c -o init.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o Peptides.so RcppExports.o charge_pI.o init.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpx60Q7Z/R.INSTALL3c7491c342559/Peptides/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpx60Q7Z/R.INSTALL3c7491c342559/Peptides/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpx60Q7Z/R.INSTALL3c7491c342559/Peptides/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-Peptides/00new/Peptides/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘Peptides’
    finding HTML links ... done
    AAdata                                  html  
    aIndex                                  html  
    aaComp                                  html  
    aaDescriptors                           html  
    aaList                                  html  
    aaSMILES                                html  
    autoCorrelation                         html  
    autoCovariance                          html  
    blosumIndices                           html  
    boman                                   html  
    charge                                  html  
    crossCovariance                         html  
    crucianiProperties                      html  
    fasgaiVectors                           html  
    hmoment                                 html  
    hydrophobicity                          html  
    instaIndex                              html  
    kideraFactors                           html  
    lengthpep                               html  
    massShift                               html  
    membpos                                 html  
    mswhimScores                            html  
    mw                                      html  
    mz                                      html  
    pI                                      html  
    pepdata                                 html  
    plotXVG                                 html  
    protFP                                  html  
    readXVG                                 html  
    stScales                                html  
    tScales                                 html  
    vhseScales                              html  
    zScales                                 html  
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Peptides)