* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘PFIM’ ...
** package ‘PFIM’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for ‘optimize’ in package ‘PFIM’
** help
*** installing help indices
converting help for package ‘PFIM’
finding HTML links ... done
Administration-class html
AdministrationConstraints-class html
Arm-class html
BayesianFim-class html
Combined1-class html
Constant-class html
Design-class html
Distribution-class html
EvaluateArm html
EvaluateDesign html
EvaluateErrorModelDerivatives html
EvaluateFisherMatrix html
EvaluateModel html
EvaluateModelGradient html
EvaluateVarianceFIM html
EvaluateVarianceModel html
Evaluation-class html
FedorovWynnAlgorithm-class html
FedorovWynnAlgorithm_Rcpp html
Fim-class html
IndividualFim-class html
LibraryOfModels-class html
LibraryOfPDModels html
LibraryOfPKModels html
LibraryOfPKPDModels-class html
LogNormal-class html
Model-class html
ModelAnalytic-class html
ModelAnalyticBolus-class html
ModelAnalyticBolusSteadyState-class html
ModelAnalyticInfusion-class html
ModelAnalyticInfusionSteadyState-class
html
ModelAnalyticSteadyState-class html
ModelBolus-class html
ModelError-class html
ModelInfusion-class html
ModelODE-class html
ModelODEDoseInEquations-class html
ModelODEDoseNotInEquations-class html
ModelODEInfusion-class html
ModelODEInfusionDoseInEquations-class html
ModelParameter-class html
MultiplicativeAlgorithm-class html
MultiplicativeAlgorithm_Rcpp html
Normal-class html
Optimization-class html
OptimizationAlgorithm-class html
PFIM-package html
PFIMProject-class html
PGBOAlgorithm-class html
PSOAlgorithm-class html
PlotEvaluation-class html
PopulationFim-class html
Proportional-class html
Report html
SamplingTimeConstraints-class html
SamplingTimes-class html
SimplexAlgorithm-class html
addModel html
addModels html
checkSamplingTimeConstraintsForContinuousOptimization
html
checkValiditySamplingConstraint html
computeVMat html
convertPKModelAnalyticToPKModelODE html
dataForArmEvaluation html
defineModel html
defineModelEquationsFromStringToFunction
html
defineModelFromLibraryOfModels html
defineModelType html
defineModelUserDefined html
definePKModel html
definePKPDModel html
fisher.simplex html
fun.amoeba html
generateFimsFromConstraints html
generateReportEvaluation html
generateReportOptimization html
generateSamplingsFromSamplingConstraints
html
generateTables html
getAdjustedGradient html
getAdministration html
getAdministrationConstraint html
getAdministrations html
getAdministrationsConstraints html
getArms html
getColumnAndParametersNamesFIM html
getColumnAndParametersNamesFIMInLatex html
getConditionNumberFixedEffects html
getConditionNumberVarianceEffects html
getContent html
getCorrelationMatrix html
getDataForArmEvaluation html
getDataFrameResults html
getDcriterion html
getDelta html
getDerivatives html
getDescription html
getDesigns html
getDeterminant html
getDistribution html
getDose html
getEigenValues html
getElementaryProtocols html
getEquation html
getEquations html
getEquationsAfterInfusion html
getEquationsDuringInfusion html
getEvaluationFIMResults html
getEvaluationInitialDesignResults html
getFim html
getFisherMatrix html
getFixedEffects html
getFixedMu html
getFixedOmega html
getFixedParameters html
getFixedTimes html
getInitialConditions html
getIterationAndCriteria html
getLambda html
getLibraryPDModels html
getLibraryPKModels html
getMinSampling html
getModel html
getModelEquations html
getModelError html
getModelErrorParametersValues html
getModelFromLibrary html
getModelParameters html
getModelParametersValues html
getMu html
getName html
getNames html
getNumberOfArms html
getNumberOfIterations html
getNumberOfParameters html
getNumberOfTimesByWindows html
getNumberOfsamplingsOptimisable html
getOdeSolverParameters html
getOmega html
getOptimalDesign html
getOptimalFrequencies html
getOptimalWeights html
getOptimizationResults html
getOptimizer html
getOptimizerParameters html
getOutcome html
getOutcomes html
getOutcomesEvaluation html
getOutcomesForEvaluation html
getOutcomesGradient html
getPDModel html
getPKModel html
getPKPDModel html
getParameters html
getPlotOptions html
getProportionsOfSubjects html
getRSE html
getSE html
getSamplingTime html
getSamplingTimeConstraint html
getSamplingTimes html
getSamplingTimesConstraints html
getSamplings html
getSamplingsWindows html
getShrinkage html
getSigmaInter html
getSigmaSlope html
getSize html
getTau html
getTimeDose html
getTinf html
getVariables html
getVarianceEffects html
getWeightThreshold html
getcError html
initialize-Administration-method html
initialize-AdministrationConstraints-method
html
initialize-Arm-method html
initialize-Combined1-method html
initialize-Constant-method html
initialize-Design-method html
initialize-Distribution-method html
initialize-Evaluation-method html
initialize-FedorovWynnAlgorithm-method
html
initialize-Fim-method html
initialize-LibraryOfModels-method html
initialize-LibraryOfPKPDModels-method html
initialize-LogNormal-method html
initialize-Model-method html
initialize-ModelAnalytic-method html
initialize-ModelAnalyticBolus-method html
initialize-ModelAnalyticBolusSteadyState-method
html
initialize-ModelAnalyticInfusion-method
html
initialize-ModelAnalyticInfusionSteadyState-method
html
initialize-ModelAnalyticSteadyState-method
html
initialize-ModelBolus-method html
initialize-ModelError-method html
initialize-ModelInfusion-method html
initialize-ModelParameter-method html
initialize-MultiplicativeAlgorithm-method
html
initialize-Normal-method html
initialize-Optimization-method html
initialize-OptimizationAlgorithm-method
html
initialize-PFIMProject-method html
initialize-PGBOAlgorithm-method html
initialize-PSOAlgorithm-method html
initialize-Proportional-method html
initialize-SamplingTimeConstraints-method
html
initialize-SamplingTimes-method html
initialize-SimplexAlgorithm-method html
isDoseInEquations html
isModelAnalytic html
isModelBolus html
isModelInfusion html
isModelODE html
isModelSteadyState html
optimize html
parametersForComputingGradient html
plotEvaluation html
plotFrequencies html
plotOutcomesEvaluation html
plotOutcomesGradient html
plotRSE html
plotSE html
plotSensitivityIndice html
plotShrinkage html
plotWeights html
reportTablesAdministration html
reportTablesDesign html
reportTablesFIM html
reportTablesModelError html
reportTablesModelParameters html
reportTablesPlot html
reportTablesSamplingConstraints html
resizeFisherMatrix html
run html
setAdministrations html
setArm html
setArms html
setContent html
setDataForArmEvaluation html
setDataForModelEvaluation html
setDerivatives html
setDescription html
setDesigns html
setDistribution html
setDose html
setEquation html
setEquations html
setEquationsAfterInfusion html
setEquationsDuringInfusion html
setEvaluationFIMResults html
setEvaluationInitialDesignResults html
setFim html
setFimTypeToString html
setFisherMatrix html
setFixedEffects html
setFixedMu html
setFixedOmega html
setInitialConditions html
setIterationAndCriteria html
setModel html
setModelError html
setModelFromLibrary html
setMu html
setName html
setNumberOfArms html
setOdeSolverParameters html
setOmega html
setOptimalDesign html
setOptimalWeights html
setOptimizationResults html
setOutcome html
setOutcomes html
setOutcomesEvaluation html
setOutcomesForEvaluation html
setOutcomesGradient html
setParameters html
setSamplingConstraintForOptimization html
setSamplingTime html
setSamplingTimes html
setSamplingTimesConstraints html
setSamplings html
setShrinkage html
setSigmaInter html
setSigmaSlope html
setSize html
setTau html
setTimeDose html
setTinf html
setVarianceEffects html
setcError html
show html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (PFIM)