* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’ * installing *source* package ‘NPBayesImputeCat’ ... ** package ‘NPBayesImputeCat’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-13 (Debian 13.3.0-1) 13.3.0’ make[1]: Entering directory '/tmp/RtmpvvvLtS/R.INSTALL2e7f632e44b870/NPBayesImputeCat/src' g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c CData.cpp -o CData.o In file included from CData.cpp:26: In static member function ‘static void* CArrayND::flat2arrayND_ln(void*, int, int, int*) [with T = int]’, inlined from ‘static void* CArrayND::flat2arrayND(void*, int, int, ...) [with T = int]’ at CArrayND.h:77:25: CArrayND.h:88:36: warning: ‘lengths’ may be used uninitialized [-Wmaybe-uninitialized] 88 | size[0] = lengths[0]; | ~~~~~~~~~^ CArrayND.h: In static member function ‘static void* CArrayND::flat2arrayND(void*, int, int, ...) [with T = int]’: CArrayND.h:68:21: note: ‘lengths’ declared here 68 | int lengths[20]; | ^~~~~~~ g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c CEnv.cpp -o CEnv.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c CLcm.cpp -o CLcm.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c CParam.cpp -o CParam.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c CTrace.cpp -o CTrace.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c SpecialFunctions.cpp -o SpecialFunctions.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c lczmain.cpp -o lczmain.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c margin_conditions.cpp -o margin_conditions.o In file included from margin_conditions.cpp:23: In static member function ‘static void* CArrayND::flat2arrayND_ln(void*, int, int, int*) [with T = int]’, inlined from ‘static void* CArrayND::flat2arrayND(void*, int, int, ...) [with T = int]’ at CArrayND.h:77:25: CArrayND.h:88:36: warning: ‘lengths’ may be used uninitialized [-Wmaybe-uninitialized] 88 | size[0] = lengths[0]; | ~~~~~~~~~^ CArrayND.h: In static member function ‘static void* CArrayND::flat2arrayND(void*, int, int, ...) [with T = int]’: CArrayND.h:68:21: note: ‘lengths’ declared here 68 | int lengths[20]; | ^~~~~~~ g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o NPBayesImputeCat.so CData.o CEnv.o CLcm.o CParam.o CTrace.o RcppExports.o SpecialFunctions.o lczmain.o margin_conditions.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR make[1]: Leaving directory '/tmp/RtmpvvvLtS/R.INSTALL2e7f632e44b870/NPBayesImputeCat/src' make[1]: Entering directory '/tmp/RtmpvvvLtS/R.INSTALL2e7f632e44b870/NPBayesImputeCat/src' make[1]: Leaving directory '/tmp/RtmpvvvLtS/R.INSTALL2e7f632e44b870/NPBayesImputeCat/src' installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-NPBayesImputeCat/00new/NPBayesImputeCat/libs ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘NPBayesImputeCat’ finding HTML links ... done CreateModel html DPMPM_nozeros_imp html DPMPM_nozeros_syn html DPMPM_zeros_imp html GetDataFrame html GetMCZ html Lcm html finding level-2 HTML links ... done MCZ html NPBayesImputCat-package html Rcpp_Lcm-class html UpdateX html X html compute_probs html fit_GLMs html kstar_MCMCdiag html marginal_compare_all_imp html marginal_compare_all_syn html pool_estimated_probs html pool_fitted_GLMs html ss16pusa_ds_MCZ html ss16pusa_mi_MCZ html ss16pusa_sample_nozeros html ss16pusa_sample_nozeros_miss html ss16pusa_sample_zeros html ss16pusa_sample_zeros_miss html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (NPBayesImputeCat)