* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘NGCHM’ ...
** package ‘NGCHM’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘NGCHM’
    finding HTML links ... done
    NGCHM-functions                         html  
    NGCHM-initialization                    html  
    NGCHM-package                           html  
    addition-methods                        html  
    cash-.shaidyRepo                        html  
    castAsInteger                           html  
    castListAsInteger                       html  
    chmAdd-method                           html  
    chmAddAxisType-method                   html  
    chmAddCSS-method                        html  
    chmAddColormap-method                   html  
    chmAddCovariate-method                  html  
    chmAddCovariateBar-method               html  
    chmAddDataset-method                    html  
    chmAddDialog-method                     html  
    chmAddLayer-method                      html  
    chmAddMenuItem-method                   html  
    chmAddMetaData-method                   html  
    chmAddOverview-method                   html  
    chmAddPCA                               html  
    chmAddProperty-method                   html  
    chmAddReducedDim                        html  
    chmAddRelated-method                    html  
    chmAddRelatedGroup-method               html  
    chmAddSpecificAxisTypeFunction-method   html  
    chmAddTSNE                              html  
    chmAddTag-method                        html  
    chmAddTemplate-method                   html  
    chmAddToolboxR-method                   html  
    chmAddToolboxR2-method                  html  
    chmAddToolboxRC-method                  html  
    chmAddUMAP                              html  
    chmAddUWOT                              html  
    chmAxis                                 html  
    chmAxisType                             html  
    chmBindFunction-method                  html  
    chmBrowse                               html  
    chmColOrder-method                      html  
    chmColorMap-set                         html  
    chmColorMap                             html  
    chmColors-set                           html  
    chmColors                               html  
    chmCovariate                            html  
    chmCovariateBar                         html  
    chmCreateCollection                     html  
    chmCreateManagedServer                  html  
    chmCreateServer                         html  
    chmCurrentCollection                    html  
    chmCurrentServer                        html  
    chmDefaultColOrder                      html  
    chmDefaultRowOrder                      html  
    chmDeployServer-method                  html  
    chmExportToFile-method                  html  
    chmExportToHTML-method                  html  
    chmExportToPDF-method                   html  
    chmFieldAccessFunction                  html  
    chmGetDataset-method                    html  
    chmGetDeployServerConfig                html  
    chmGetFunction                          html  
    chmGetOverview                          html  
    chmGetProperty-method                   html  
    chmGetTypeInfo                          html  
    chmGetURL-method                        html  
    chmHasProperty-method                   html  
    chmInstall-method                       html  
    chmLabel-set                            html  
    chmLabel                                html  
    chmLayer-set                            html  
    chmLayer                                html  
    chmListFunctions                        html  
    chmListServers                          html  
    chmListTypes                            html  
    chmLoadCHM-method                       html  
    chmLoadShaidyCHM                        html  
    chmMake-method                          html  
    chmMakePrivate-method                   html  
    chmMakePublic-method                    html  
    chmManager                              html  
    chmName-method                          html  
    chmNew                                  html  
    chmNewColorMap                          html  
    chmNewCovariate                         html  
    chmNewCovariateBar                      html  
    chmNewDataLayer                         html  
    chmNewDataset                           html  
    chmNewDialog                            html  
    chmNewFunction                          html  
    chmNewProperty                          html  
    chmNewServer                            html  
    chmOriginalColOrder                     html  
    chmOriginalRowOrder                     html  
    chmProperties                           html  
    chmProperty-set                         html  
    chmProperty                             html  
    chmRandomColOrder                       html  
    chmRandomRowOrder                       html  
    chmRegisterAxisFunction                 html  
    chmRegisterFunction                     html  
    chmRegisterGetMetadataFunction          html  
    chmRegisterMatrixFunction               html  
    chmRegisterToolboxFunction              html  
    chmRegisterType                         html  
    chmRegisterTypeMapper                   html  
    chmRegisterTypeSplitter                 html  
    chmRowOrder-method                      html  
    chmServer                               html  
    chmSetCollection                        html  
    chmSetCredentials-method                html  
    chmSetDeployServerConfig                html  
    chmStringopFunction                     html  
    chmTreeGaps                             html  
    chmUninstall-method                     html  
    chmUrlBase-method                       html  
    chmWriteCustomJS                        html  
    getDimensions-method                    html  
    gitHashObject                           html  
    initLogging                             html  
    ngchm-class                             html  
    ngchmAddDatasetBlob                     html  
    ngchmAddMatrixToCollection              html  
    ngchmAddObjectToCollection              html  
    ngchmAxis-class                         html  
    ngchmAxisFunction-class                 html  
    ngchmAxisType-class                     html  
    ngchmBar-class                          html  
    ngchmCSS-class                          html  
    ngchmCollectionInCollection             html  
    ngchmCollectionTree                     html  
    ngchmColormap-class                     html  
    ngchmCovariate-class                    html  
    ngchmCreateServerProtocol               html  
    ngchmDataset-class                      html  
    ngchmDialog-class                       html  
    ngchmFindRepo                           html  
    ngchmGetDataFileShaid                   html  
    ngchmGetEnv                             html  
    ngchmGetHandleHTTR                      html  
    ngchmGetLabels                          html  
    ngchmGetLabelsStr                       html  
    ngchmGetProtoParam                      html  
    ngchmGetServerProtocol                  html  
    ngchmInitShaidyRepository               html  
    ngchmJS-class                           html  
    ngchmLayer-class                        html  
    ngchmListServerProtocols                html  
    ngchmLoadDatasetBlob                    html  
    ngchmMakeFormat.original                html  
    ngchmMakeFormat.shaidy                  html  
    ngchmMatrixFunction-class               html  
    ngchmMenuItem-class                     html  
    ngchmMetaData-class                     html  
    ngchmNewBar                             html  
    ngchmNewCollection                      html  
    ngchmOverview-class                     html  
    ngchmProperty-class                     html  
    ngchmProtoParamCheck                    html  
    ngchmPushSourceRepository               html  
    ngchmPushSourceServer                   html  
    ngchmPushTempRepository                 html  
    ngchmRegisterServer                     html  
    ngchmRelated-class                      html  
    ngchmRelatedGroup-class                 html  
    ngchmRenderChm                          html  
    ngchmResponseJSON                       html  
    ngchmRowCenter                          html  
    ngchmSaveAsDatasetBlob                  html  
    ngchmSaveAsDendrogramBlob               html  
    ngchmSaveChmAsBlob                      html  
    ngchmServer-class                       html  
    ngchmServerProtocol-class               html  
    ngchmTemplate-class                     html  
    ngchmTileDataset                        html  
    ngchmTypeMapper-class                   html  
    ngchmUnregisterServer                   html  
    ngchmValueProp-class                    html  
    ngchmVersion2-class                     html  
    optDendrogram-class                     html  
    plot.ngchmVersion2                      html  
    print.ngchm.type.info                   html  
    print.shaidyRepo                        html  
    shaid-class                             html  
    shaidyAddFileBlob                       html  
    shaidyBlobExists                        html  
    shaidyCopyBlob                          html  
    shaidyCreateProtoBlob                   html  
    shaidyFinalizeProtoBlob                 html  
    shaidyFindRepo                          html  
    shaidyGetComponents-method              html  
    shaidyGetShaid-method                   html  
    shaidyHashProtoBlob                     html  
    shaidyInitRepository                    html  
    shaidyLoadProvenanceDB                  html  
    shaidyLoadProvidDB                      html  
    shaidyLoadRepository                    html  
    shaidyNewCache                          html  
    shaidyProvenance                        html  
    shaidyRepoAPI                           html  
    treeCuts-class                          html  
    verifyNumeric                           html  
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (NGCHM)