* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’ * installing *source* package ‘NGCHM’ ... ** package ‘NGCHM’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘NGCHM’ finding HTML links ... done NGCHM-functions html NGCHM-initialization html NGCHM-package html addition-methods html cash-.shaidyRepo html castAsInteger html castListAsInteger html chmAdd-method html chmAddAxisType-method html chmAddCSS-method html chmAddColormap-method html chmAddCovariate-method html chmAddCovariateBar-method html chmAddDataset-method html chmAddDialog-method html chmAddLayer-method html chmAddMenuItem-method html chmAddMetaData-method html chmAddOverview-method html chmAddPCA html chmAddProperty-method html chmAddReducedDim html chmAddRelated-method html chmAddRelatedGroup-method html chmAddSpecificAxisTypeFunction-method html chmAddTSNE html chmAddTag-method html chmAddTemplate-method html chmAddToolboxR-method html chmAddToolboxR2-method html chmAddToolboxRC-method html chmAddUMAP html chmAddUWOT html chmAxis html chmAxisType html chmBindFunction-method html chmBrowse html chmColOrder-method html chmColorMap-set html chmColorMap html chmColors-set html chmColors html chmCovariate html chmCovariateBar html chmCreateCollection html chmCreateManagedServer html chmCreateServer html chmCurrentCollection html chmCurrentServer html chmDefaultColOrder html chmDefaultRowOrder html chmDeployServer-method html chmExportToFile-method html chmExportToHTML-method html chmExportToPDF-method html chmFieldAccessFunction html chmGetDataset-method html chmGetDeployServerConfig html chmGetFunction html chmGetOverview html chmGetProperty-method html chmGetTypeInfo html chmGetURL-method html chmHasProperty-method html chmInstall-method html chmLabel-set html chmLabel html chmLayer-set html chmLayer html chmListFunctions html chmListServers html chmListTypes html chmLoadCHM-method html chmLoadShaidyCHM html chmMake-method html chmMakePrivate-method html chmMakePublic-method html chmManager html chmName-method html chmNew html chmNewColorMap html chmNewCovariate html chmNewCovariateBar html chmNewDataLayer html chmNewDataset html chmNewDialog html chmNewFunction html chmNewProperty html chmNewServer html chmOriginalColOrder html chmOriginalRowOrder html chmProperties html chmProperty-set html chmProperty html chmRandomColOrder html chmRandomRowOrder html chmRegisterAxisFunction html chmRegisterFunction html chmRegisterGetMetadataFunction html chmRegisterMatrixFunction html chmRegisterToolboxFunction html chmRegisterType html chmRegisterTypeMapper html chmRegisterTypeSplitter html chmRowOrder-method html chmServer html chmSetCollection html chmSetCredentials-method html chmSetDeployServerConfig html chmStringopFunction html chmTreeGaps html chmUninstall-method html chmUrlBase-method html chmWriteCustomJS html getDimensions-method html gitHashObject html initLogging html ngchm-class html ngchmAddDatasetBlob html ngchmAddMatrixToCollection html ngchmAddObjectToCollection html ngchmAxis-class html ngchmAxisFunction-class html ngchmAxisType-class html ngchmBar-class html ngchmCSS-class html ngchmCollectionInCollection html ngchmCollectionTree html ngchmColormap-class html ngchmCovariate-class html ngchmCreateServerProtocol html ngchmDataset-class html ngchmDialog-class html ngchmFindRepo html ngchmGetDataFileShaid html ngchmGetEnv html ngchmGetHandleHTTR html ngchmGetLabels html ngchmGetLabelsStr html ngchmGetProtoParam html ngchmGetServerProtocol html ngchmInitShaidyRepository html ngchmJS-class html ngchmLayer-class html ngchmListServerProtocols html ngchmLoadDatasetBlob html ngchmMakeFormat.original html ngchmMakeFormat.shaidy html ngchmMatrixFunction-class html ngchmMenuItem-class html ngchmMetaData-class html ngchmNewBar html ngchmNewCollection html ngchmOverview-class html ngchmProperty-class html ngchmProtoParamCheck html ngchmPushSourceRepository html ngchmPushSourceServer html ngchmPushTempRepository html ngchmRegisterServer html ngchmRelated-class html ngchmRelatedGroup-class html ngchmRenderChm html ngchmResponseJSON html ngchmRowCenter html ngchmSaveAsDatasetBlob html ngchmSaveAsDendrogramBlob html ngchmSaveChmAsBlob html ngchmServer-class html ngchmServerProtocol-class html ngchmTemplate-class html ngchmTileDataset html ngchmTypeMapper-class html ngchmUnregisterServer html ngchmValueProp-class html ngchmVersion2-class html optDendrogram-class html plot.ngchmVersion2 html print.ngchm.type.info html print.shaidyRepo html shaid-class html shaidyAddFileBlob html shaidyBlobExists html shaidyCopyBlob html shaidyCreateProtoBlob html shaidyFinalizeProtoBlob html shaidyFindRepo html shaidyGetComponents-method html shaidyGetShaid-method html shaidyHashProtoBlob html shaidyInitRepository html shaidyLoadProvenanceDB html shaidyLoadProvidDB html shaidyLoadRepository html shaidyNewCache html shaidyProvenance html shaidyRepoAPI html treeCuts-class html verifyNumeric html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (NGCHM)