* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘MixviR’ ...
** package ‘MixviR’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘MixviR’
    finding HTML links ... done
    add_depths_to_ref                       html  
    call_mutations                          html  
    create_ref                              html  
    estimate_lineages                       html  
    explore_mutations                       html  
    get_codons                              html  
    id_indels                               html  
    id_snps                                 html  
    vcf_to_mixvir                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (MixviR)