* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘MicroMoB’ ...
** package ‘MicroMoB’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.2.0-8) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpE8NS39/R.INSTALL34d1176d44ddba/MicroMoB/src'
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c MicroMoB-init.c -o MicroMoB-init.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c utils_sample.c -o utils_sample.o
gcc-14 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o MicroMoB.so MicroMoB-init.o utils_sample.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpE8NS39/R.INSTALL34d1176d44ddba/MicroMoB/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpE8NS39/R.INSTALL34d1176d44ddba/MicroMoB/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpE8NS39/R.INSTALL34d1176d44ddba/MicroMoB/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-MicroMoB/00new/MicroMoB/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘MicroMoB’
finding HTML links ... done
MicroMoB html
api_config_global html
approx_equal html
compute_H.MOI html
compute_H html
compute_H.SIP html
compute_H.SIR html
compute_H.SIS html
compute_O html
compute_O.trace html
compute_Psi.MOI html
compute_Psi html
compute_Psi.SIP html
compute_Psi.SIR html
compute_Psi.SIS html
compute_Wd html
compute_Wd.trace html
compute_Z.BQ html
compute_Z.RM html
compute_Z html
compute_Z.trace html
compute_bloodmeal html
compute_bloodmeal_simple html
compute_emergents.BH html
compute_emergents html
compute_emergents.trace html
compute_emergents.trace_deterministic html
compute_emergents.trace_stochastic html
compute_f.BQ html
compute_f.RM html
compute_f html
compute_f.trace html
compute_oviposit.BQ html
compute_oviposit.BQ_deterministic html
compute_oviposit.BQ_stochastic html
compute_oviposit.RM html
compute_oviposit.RM_deterministic html
compute_oviposit.RM_stochastic html
compute_oviposit html
compute_oviposit.trace html
compute_q.BQ html
compute_q.RM html
compute_q html
compute_q.trace html
compute_wf.MOI html
compute_wf html
compute_wf.SIP html
compute_wf.SIR html
compute_wf.SIS html
compute_x.MOI html
compute_x html
compute_x.SIP html
compute_x.SIR html
compute_x.SIS html
compute_xd html
compute_xd.trace html
distribute html
divmod html
draw_multinom html
get_K_aqua_BH html
get_config_alternative_trace html
get_config_aqua_BH html
get_config_aqua_trace html
get_config_humans_MOI html
get_config_humans_SIR html
get_config_humans_SIS html
get_config_mosquito_RM html
get_config_mosquito_trace html
get_config_visitor_trace html
get_eip_mosquito_RM html
get_f_mosquito_RM html
get_kappa_mosquito_RM html
get_lambda_aqua_trace html
get_molt_aqua_BH html
get_nu_mosquito_RM html
get_p_mosquito_RM html
get_psi_mosquito_RM html
get_q_mosquito_RM html
get_surv_aqua_BH html
get_tmax html
get_tnow html
is_binary html
make_MicroMoB html
observe_pfpr html
observe_pfpr.SIP html
observe_pfpr.SIS html
output_aqua.BH html
output_aqua html
output_aqua.trace html
output_mosquitoes.RM html
output_mosquitoes html
output_mosquitoes.trace html
sample_stochastic_matrix html
sample_stochastic_vector html
set_K_aqua_BH html
set_eip_mosquito_RM html
set_f_mosquito_RM html
set_kappa_mosquito_RM html
set_lambda_aqua_trace html
set_molt_aqua_BH html
set_nu_mosquito_RM html
set_p_mosquito_RM html
set_psi_mosquito_RM html
set_q_mosquito_RM html
set_surv_aqua_BH html
setup_alternative_trace html
setup_aqua_BH html
setup_aqua_trace html
setup_humans_MOI html
setup_humans_SIP html
setup_humans_SIR html
setup_humans_SIS html
setup_mosquito_BQ html
setup_mosquito_RM html
setup_mosquito_trace html
setup_visitor_trace html
step_aqua.BH html
step_aqua.BH_deterministic html
step_aqua.BH_stochastic html
step_aqua html
step_aqua.trace html
step_humans.MOI html
step_humans.MOI_deterministic html
step_humans.MOI_stochastic html
step_humans html
step_humans.SIP html
step_humans.SIP_deterministic html
step_humans.SIP_stochastic html
step_humans.SIR html
step_humans.SIR_deterministic html
step_humans.SIR_stochastic html
step_humans.SIS html
step_humans.SIS_deterministic html
step_humans.SIS_stochastic html
step_mosquitoes.BQ html
step_mosquitoes.BQ_deterministic html
step_mosquitoes.BQ_stochastic html
step_mosquitoes.RM html
step_mosquitoes.RM_deterministic html
step_mosquitoes.RM_stochastic html
step_mosquitoes html
step_mosquitoes.trace html
strata_to_residency_counts html
strata_to_residency_proportion html
time_patch_varying_parameter html
time_varying_parameter html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (MicroMoB)