- using R version 4.4.2 Patched (2024-12-13 r87451)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc-14 (Debian 14.2.0-8) 14.2.0
GNU Fortran (Debian 14.2.0-8) 14.2.0
- running under: Debian GNU/Linux trixie/sid
- using session charset: UTF-8
- checking for file ‘MapGAM/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘MapGAM’ version ‘1.3’
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking serialization versions ... OK
- checking whether package ‘MapGAM’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [3s/4s] OK
- checking whether the package can be loaded with stated dependencies ... [3s/3s] OK
- checking whether the package can be unloaded cleanly ... [3s/3s] OK
- checking whether the namespace can be loaded with stated dependencies ... [3s/3s] OK
- checking whether the namespace can be unloaded cleanly ... [3s/3s] OK
- checking loading without being on the library search path ... [3s/3s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [18s/22s] OK
- checking Rd files ... [1s/1s] NOTE
checkRd: (-1) MapGAM-package.Rd:28: Lost braces
28 | Bai L, Gillen DL, Bartell SM, Vieira VM. \doi{10.32614/RJ-2020-001}{Mapping smoothed spatial effect estimates from individual-level data: MapGAM}. The R Journal 2020, 12:32-48.
| ^
checkRd: (-1) MapGAM-package.Rd:32: Lost braces
32 | Kelsall J, Diggle P. \doi{10.1111/1467-9876.00128}{Spatial variation in risk of disease: a nonparametric binary regression approach}. J Roy Stat Soc C-App 1998, 47:559-573.
| ^
checkRd: (-1) MapGAM-package.Rd:34: Lost braces
34 | Tang IW, Bartell SM, Vieira VM. \doi{10.1016/j.sste.2023.100584}{Unmatched Spatially Stratified Controls: A simulation study examining efficiency and precision using spatially-diverse controls and generalized additive models}. Spatial and Spatio-temporal Epidemiology 2023, 45:100584.
| ^
checkRd: (-1) MapGAM-package.Rd:36: Lost braces
36 | Vieira V, Webster T, Weinberg J, Aschengrau A, Ozonoff D. \doi{10.1186/1476-069X-4-11}{Spatial analysis of lung, colorectal, and breast cancer on Cape Cod: An application of generalized additive models to case-control data}. Environmental Health 2005, 4:11.
| ^
checkRd: (-1) MapGAM-package.Rd:38: Lost braces
38 | Webster T, Vieira V, Weinberg J, Aschengrau A. \doi{10.1186/1476-072X-5-26}{Method for mapping population-based case-control studies using Generalized Additive Models}. International Journal of Health Geographics 2006, 5:26.
| ^
checkRd: (-1) MapGAM-package.Rd:40: Lost braces
40 | Young RL, Weinberg J, Vieira V, Ozonoff A, Webster TF. \doi{10.1186/1476-072X-9-37}{A power comparison of generalized additive models and the spatial scan statistic in a case-control setting}. International Journal of Health Geographics 2010, 9:37.
| ^
checkRd: (-1) modgam.Rd:108: Lost braces
108 | Bai L, Gillen DL, Bartell SM, Vieira VM. \doi{10.32614/RJ-2020-001}{Mapping smoothed spatial effect estimates from individual-level data: MapGAM}. The R Journal 2020, 12:32-48.
| ^
checkRd: (-1) modgam.Rd:112-113: Lost braces
112 | Kelsall J, Diggle P. \doi{10.1111/1467-9876.00128}{Spatial variation in risk of disease: a nonparametric binary
| ^
checkRd: (-1) modgam.Rd:115: Lost braces
115 | Vieira V, Webster T, Weinberg J, Aschengrau A, Ozonoff D. \doi{10.1186/1476-069X-4-11}{Spatial analysis of lung, colorectal, and breast cancer on Cape Cod: An application of generalized additive models to case-control data}. Environmental Health 2005, 4:11.
| ^
checkRd: (-1) modgam.Rd:117: Lost braces
117 | Webster T, Vieira V, Weinberg J, Aschengrau A. \doi{10.1186/1476-072X-5-26}{Method for mapping population-based case-control studies using Generalized Additive Models}. International Journal of Health Geographics 2006, 5:26.
| ^
checkRd: (-1) modgam.Rd:119: Lost braces
119 | Young RL, Weinberg J, Vieira V, Ozonoff A, Webster TF. \doi{10.1186/1476-072X-9-37}{A power comparison of generalized additive models and the spatial scan statistic in a case-control setting}. International Journal of Health Geographics 2010, 9:37.
| ^
checkRd: (-1) sampcont.Rd:74: Lost braces
74 | Tang IW, Bartell SM, Vieira VM. \doi{10.1016/j.sste.2023.100584}{Unmatched Spatially Stratified Controls: A simulation study examining efficiency and precision using spatially-diverse controls and generalized additive models}. Spatial and Spatio-temporal Epidemiology 2023, 45:100584.
| ^
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [1s/1s] OK
- checking data for ASCII and uncompressed saves ... OK
- checking examples ... [6s/9s] OK
- checking PDF version of manual ... [5s/7s] OK
- checking HTML version of manual ... [2s/3s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 NOTE