* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘MSEtool’ ...
** package ‘MSEtool’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.2.0-8) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmph6YUOG/R.INSTALL33b70c5e01675/MSEtool/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c LinInter.cpp -o LinInter.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c MSYcalcs.cpp -o MSYcalcs.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c calcVatAge.cpp -o calcVatAge.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c genLenComp.cpp -o genLenComp.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c grav.cpp -o grav.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c movefit_Rcpp.cpp -o movefit_Rcpp.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c popddynCPP.cpp -o popddynCPP.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o MSEtool.so LinInter.o MSYcalcs.o RcppExports.o calcVatAge.o genLenComp.o grav.o movefit_Rcpp.o popddynCPP.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmph6YUOG/R.INSTALL33b70c5e01675/MSEtool/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmph6YUOG/R.INSTALL33b70c5e01675/MSEtool/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmph6YUOG/R.INSTALL33b70c5e01675/MSEtool/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-MSEtool/00new/MSEtool/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘MSEtool’
finding HTML links ... done
ASAP2OM html
Assess2MOM html
Assess2OM html
Awatea2OM html
BAM2MOM html
BlankSelPlot html
Blow_opt html
CALsimp html
CSRA html
CSRAfunc html
CalcAsymptoticDist html
CalcMPDynamics html
CalculateQ html
Can html
CheckDuplicate html
CheckMPs html
CheckOM html
ChkYrs html
Choose html
CombineMMP html
Converge html
Cos_thresh_tab html
Cplot html
DFO_bar html
DFO_hist html
DFO_plot html
DFO_plot2 html
DFO_proj html
DFO_quant html
DFO_report html
DFO_spider html
DFO_tab html
DFO_tab_formatted html
DLMDataDir html
Data-class-objects html
Data-class html
Data2csv html
DataDescription html
DataDir html
DataInit html
DataSlots html
Data_xl html
Dom html
Emp html
FMSYref html
Fease html
Fleet-class-objects html
Fleet-class html
FleetDescription html
GenerateRandomWalk html
Herm-int html
Hist-class html
HistDescription html
HistMICE html
Imp-class-objects html
Imp-class html
ImpDescription html
Input html
Kplot html
L2A html
LH2OM html
LHdatabase html
Lag_Data html
LinInterp html
ML2D html
MMSE-class html
MOM-class-objects html
MOM-class html
MPCalcsNAs html
MPtype html
MPurl html
MSE-class html
MSEDescription html
MSEextra html
MSYCalcs html
NAor0 html
NIL html
NOAA_plot html
OM-class-objects html
OM-class html
OMDescription html
OMdoc html
OMexample html
OMinit html
Obs-class-objects html
Obs-class html
ObsDescription html
OneRep html
PMLimit html
PMobj-class html
PWhisker html
PerformanceMetric html
Pplot html
Pplot2 html
Range html
RealFease html
Rec-class html
Replace html
Report html
ReqData html
Required html
ResFromRel html
SIL html
SS2Data html
SS2DataMOM html
SS2MOM html
SSBrefplot html
SampleCpars html
SampleFleetPars html
SampleImpPars html
SampleObsPars html
SampleStockPars html
Sense html
SimulatedData html
SketchFun html
Splot html
Stock-class-objects html
Stock-class html
StockDescription html
Sub html
SubCpars html
SubOM html
TAC html
TACfilter html
TEG html
Taxa_Table html
Thresh_tab html
TradePlot html
Turing html
Uses html
VOI html
VOI2 html
VOIplot html
WHAM2OM html
XL2Data html
XL2Fleet html
XL2OM html
XL2Stock html
alphaconv html
applyMMP html
applyMP html
avail html
boxplot.Data html
calcMean html
calcProb html
calcRefYield html
char.log-class html
checkMSE html
cparscheck html
cv html
dnormal html
doHCR html
doIfreq html
doRec html
genSizeCompWrap html
getAFC html
getBlow html
getDataList html
getEffhist html
getMP html
getclass html
getfirstlev html
getmov2 html
getnIVs html
getq_multi_MICE html
getsel html
hconv html
hist2 html
hrate html
iSCAM html
iSCAM2OM html
iSCAMcomps html
iSCAMinds html
initialize-methods html
joinData html
join_plots html
label.class-class html
ldim html
makeMOM html
makeRel html
makeTransparent html
makemov html
makemov2 html
movestockCPP html
movfit_Rcpp html
multiData html
multiDataS html
multiMSE html
multidebug html
optCPU html
optMSY_eq html
optQ html
optYield html
plot.Data html
plot.MMSE html
plot.MOM html
plot.MSE html
plot.Stock html
plotFun html
plotOFL html
plotRel html
plotmulti html
plotquant html
popdynCPP html
popdynMICE html
popdynOneMICE html
popdynOneTScpp html
prob.class-class html
qestMICE html
quantile_plot html
replic8 html
runCOSEWIC html
runInMP html
runMP html
runMSE html
sample_steepness2 html
sdconv html
select_MP html
setup html
show-MSE html
show-MSEtool html
show-Rec html
simCAA html
simCAL html
simmov html
simmov2 html
smoothy html
summary-Data html
summary-MMSE html
summary-MSE html
tinyErr html
trlnorm html
tune_MP html
validcpars html
wormplot html
writeCSV html
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (MSEtool)