* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘MOCHA’ ...
** package ‘MOCHA’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
in method for ‘callOpenTiles’ with signature ‘ATACFragments="GRangesList"’: no definition for class “GRangesList”
in method for ‘callOpenTiles’ with signature ‘ATACFragments="ArchRProject"’: no definition for class “ArchRProject”
** help
*** installing help indices
  converting help for package ‘MOCHA’
    finding HTML links ... done
    GRangesToString                         html  
    MotifEnrichment                         html  
    MotifSetEnrichmentAnalysis              html  
    StringsToGRanges                        html  
    addAccessibilityShift                   html  
    addMotifSet                             html  
    annotateTiles                           html  
    bulkDimReduction                        html  
    bulkUMAP                                html  
    callOpenTiles-methods                   html  
    combineSampleTileMatrix                 html  
    differentialsToGRanges                  html  
    dot-counts_plot_default_theme           html  
    dot-gene_plot_theme                     html  
    exampleBlackList                        html  
    exampleCellColData                      html  
    exampleFragments                        html  
    exportCoverage                          html  
    exportDifferentials                     html  
    exportMotifs                            html  
    exportOpenTiles                         html  
    exportSmoothedInsertions                html  
    extractErrorFromConsensusTiles          html  
    extractRegion                           html  
    filterCoAccessibleLinks                 html  
    finalModelObject                        html  
    getAltTSS                               html  
    getAnnotationDbFromInstalledPkgname     html  
    getCellPopMatrix                        html  
    getCellTypeTiles                        html  
    getCellTypes                            html  
    getCoAccessibleLinks                    html  
    getCoverage                             html  
    getDifferentialAccessibleTiles          html  
    getIntensityThreshold                   html  
    getModelValues                          html  
    getPopFrags                             html  
    getPromoterGenes                        html  
    getSampleCellTypeMetadata               html  
    getSampleTileMatrix                     html  
    getSequencingBias                       html  
    mergeTileResults                        html  
    packMOCHA                               html  
    pilotLMEM                               html  
    pilotZIGLMM                             html  
    plotConsensus                           html  
    plotIntensityDistribution               html  
    plotRegion                              html  
    renameCellTypes                         html  
    runLMEM                                 html  
    runZIGLMM                               html  
    simplifiedConsensusTiles                html  
    singlePopulationConsensusTiles          html  
    singlePopulationSampleTileMatrix        html  
    subsetMOCHAObject                       html  
    testCoAccessibility                     html  
    testCoAccessibilityChromVar             html  
    testCoAccessibilityRandom               html  
    unpackMOCHA                             html  
    varZIGLMM                               html  
    youden_threshold                        html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (MOCHA)