* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’ * installing *source* package ‘MIC’ ... ** package ‘MIC’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-16) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpzZjIVs/R.INSTALL111da826ee3363/MIC/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c kmers.cpp -o kmers.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o MIC.so RcppExports.o kmers.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpzZjIVs/R.INSTALL111da826ee3363/MIC/src' make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpzZjIVs/R.INSTALL111da826ee3363/MIC/src' make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpzZjIVs/R.INSTALL111da826ee3363/MIC/src' installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-MIC/00new/MIC/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘MIC’ finding HTML links ... done MIC-package html bias html clean_raw_mic html combined_file_system html compare_mic html compare_sir html download_patric_db html ecoffs html essential_agreement html example_mics html fill_dilution_levels html force_mic html genome_to_libsvm html genomes_to_kmer_libsvm html get_mic html kmers html load_patric_db html mic_censor html mic_r_breakpoint html mic_range html mic_s_breakpoint html mic_uncensor html move_files html plot.mic_validation html print.mic_validation html print.mic_validation_summary html pull_PATRIC_genomes html qc_in_range html qc_on_target html replace_multiple_slashes html reverse_complement html split_and_combine_files html squeezed_index_to_str html squeezed_mers html standardise_mic html summary.mic_validation html table html tidy_patric_meta_data html train_test_filesystem html unsqueezed_index_to_str html unsqueezed_mers html xgb.cv.lowmem html *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MIC)