* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘LaMa’ ...
** package ‘LaMa’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.2.0-8) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpkyfcfp/R.INSTALL3df72c779d9f14/LaMa/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c forward_algorithms.cpp -o forward_algorithms.o
forward_algorithms.cpp: In function ‘double forward_cpp_h(const arma::mat&, const arma::rowvec&, const arma::mat&)’:
forward_algorithms.cpp:20:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
20 | for (unsigned int i=1; i<nObs; i++){
| ~^~~~~
forward_algorithms.cpp: In function ‘double forward_cpp_g(const arma::mat&, const arma::rowvec&, const arma::cube&)’:
forward_algorithms.cpp:40:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
40 | for (unsigned int i=1; i<nObs; i++){
| ~^~~~~
forward_algorithms.cpp: In function ‘double forward_cpp_g_tracks(const arma::mat&, const arma::mat&, const arma::cube&, Rcpp::IntegerVector)’:
forward_algorithms.cpp:64:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
64 | for (unsigned int t=0; t<nObs; t++){
| ~^~~~~
forward_algorithms.cpp:66:9: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
66 | if(k<K && t==(unsigned)(trackInd(k)-1)) {
| ~^~
forward_algorithms.cpp: In function ‘double forward_cpp_h_tracks(const arma::mat&, const arma::mat&, const arma::cube&, Rcpp::IntegerVector)’:
forward_algorithms.cpp:96:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
96 | for (unsigned int t=0; t<nObs; t++){
| ~^~~~~
forward_algorithms.cpp:98:9: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
98 | if(k<K && t==(unsigned)(trackInd(k)-1)) {
| ~^~
forward_algorithms.cpp: In function ‘double forward_cpp_p(const arma::mat&, const arma::rowvec&, const arma::cube&, std::vector<int, std::allocator<int> >)’:
forward_algorithms.cpp:124:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
124 | for (unsigned int i=1; i<nObs; i++){
| ~^~~~~
forward_algorithms.cpp: In function ‘double forward_cpp_s(const arma::mat&, const arma::rowvec&, const arma::mat&, const Rcpp::IntegerVector&)’:
forward_algorithms.cpp:146:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
146 | for (unsigned int i=1; i<nObs; i++){
| ~^~~~~
forward_algorithms.cpp: In function ‘double forward_cpp_sp(const arma::mat&, const arma::rowvec&, const arma::cube&, const Rcpp::IntegerVector&, std::vector<int, std::allocator<int> >)’:
forward_algorithms.cpp:168:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
168 | for (unsigned int i=1; i<nObs; i++){
| ~^~~~~
forward_algorithms.cpp: In function ‘arma::mat logalpha_cpp(const arma::mat&, const arma::rowvec&, const arma::cube&)’:
forward_algorithms.cpp:191:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
191 | for (unsigned int i=1; i<nObs; i++){
| ~^~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c rep_times.cpp -o rep_times.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c tpm_functions.cpp -o tpm_functions.o
tpm_functions.cpp: In function ‘arma::cube semigroup_cpp(const arma::mat&, const std::vector<double>&)’:
tpm_functions.cpp:55:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
55 | for (unsigned int i = 0; i < n; i++) {
| ~~^~~
tpm_functions.cpp: In function ‘arma::mat tpm_thinned_t_cpp(const arma::cube&, int)’:
tpm_functions.cpp:75:25: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
75 | for(arma::uword i=0; i<t-1; i++) {
| ~^~~~
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o LaMa.so RcppExports.o forward_algorithms.o rep_times.o tpm_functions.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpkyfcfp/R.INSTALL3df72c779d9f14/LaMa/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpkyfcfp/R.INSTALL3df72c779d9f14/LaMa/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpkyfcfp/R.INSTALL3df72c779d9f14/LaMa/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-LaMa/00new/LaMa/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘LaMa’
finding HTML links ... done
LaMa-package html
buildSmoothDens html
calc_trackInd html
dgmrf2 html
forward html
forward_g html
forward_hsmm html
forward_ihsmm html
forward_p html
forward_phsmm html
forward_s html
forward_sp html
gamma2 html
generator html
make_matrices html
make_matrices_dens html
nessi html
penalty html
pred_matrix html
pseudo_res html
pseudo_res_discrete html
qreml html
sdreportMC html
stateprobs html
stateprobs_g html
stateprobs_p html
stationary html
stationary_cont html
stationary_p html
stationary_p_sparse html
stationary_sparse html
tpm html
tpm_cont html
tpm_emb html
tpm_emb_g html
tpm_g html
tpm_hsmm html
tpm_hsmm2 html
tpm_ihsmm html
tpm_p html
tpm_phsmm html
tpm_phsmm2 html
tpm_thinned html
trex html
trigBasisExp html
viterbi html
viterbi_g html
viterbi_p html
vm html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (LaMa)