* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘HardyWeinberg’ ...
** package ‘HardyWeinberg’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.2.0-8) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpwoFG9h/R.INSTALL3a881c66db7641/HardyWeinberg/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c HWxChromosomal.cpp -o HWxChromosomal.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c SNPHWEX.cpp -o SNPHWEX.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c support.cpp -o support.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o HardyWeinberg.so HWxChromosomal.o RcppExports.o SNPHWEX.o support.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpwoFG9h/R.INSTALL3a881c66db7641/HardyWeinberg/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpwoFG9h/R.INSTALL3a881c66db7641/HardyWeinberg/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpwoFG9h/R.INSTALL3a881c66db7641/HardyWeinberg/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-HardyWeinberg/00new/HardyWeinberg/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘HardyWeinberg’
finding HTML links ... done
AFtest html
AllelesToTriangular html
Alzheimer html
CEUchr22 html
EAFExact html
GenerateSamples html
Glyoxalase html
HWABO html
HWAIC html
HWAlltests html
HWAlr html
HWAlrPlot html
HWChisq html
HWChisqMat html
HWChisqStats html
HWClo html
HWClr html
HWClrPlot html
HWCondProbAB html
HWD html
HWData html
HWEM html
HWExact html
HWExactMat html
HWExactPrevious html
HWExactStats html
HWGenotypePlot html
HWIlr html
HWIlrPlot html
HWLRAllTests html
HWLRtest html
HWLindley html
HWLindley.cri html
HWLratio html
HWMissing html
HWNetwork html
HWPerm html
HWPerm.mult html
HWPosterior html
HWPower html
HWQqplot html
HWStr html
HWStrata html
HWTernaryPlot html
HWTriExact html
HWf html
HapMapCHBChr1 html
HardyWeinberg-package html
JPTmultiallelicsChr7 html
JPTmultiallelicsChrX html
JPTsnps html
JPTtriallelicsChr7 html
JPTtriallelicsChrX html
MakeCounts html
MakeFactor html
Markers html
Mourant html
NistSTRs html
TSIXTriAllelics html
ThetatoF html
UniqueGenotypeCounts html
af html
afx html
agcounts html
alleles html
dgraffelmanweir.bi html
dlevene html
dlevene.bi html
fisherz html
fold html
genlabels html
he html
ifisherz html
is.mono html
mac html
maf html
n.alleles html
order.auto html
order.x html
qqunif html
recode html
shannon html
strsort html
toTriangular html
vaf html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (HardyWeinberg)