* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘Haplin’ ...
** package ‘Haplin’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.2.0-1) 14.2.0’
using C++ compiler: ‘g++-14 (Debian 14.2.0-1) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpfkAU0F/R.INSTALLbe6462090d692/Haplin/src'
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c Haplin_init.c -o Haplin_init.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c dists.cc -o dists.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o Haplin.so Haplin_init.o dists.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpfkAU0F/R.INSTALLbe6462090d692/Haplin/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpfkAU0F/R.INSTALLbe6462090d692/Haplin/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpfkAU0F/R.INSTALLbe6462090d692/Haplin/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-Haplin/00new/Haplin/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘Haplin’
    finding HTML links ... done
    cbindFiles                              html  
    convertPed                              html  
    create.missingness.matrix               html  
    f.check.unique.ids                      html  
    f.convert.matrix.ff                     html  
    f.create.snp.names                      html  
    f.extract.ff.numeric                    html  
    f.get.gen.data.cols                     html  
    finishParallelRun                       html  
    genDataGetPart                          html  
    genDataLoad                             html  
    genDataPreprocess                       html  
    genDataRead                             html  
    getChildren                             html  
    getDyads                                html  
    getFathers                              html  
    getFullTriads                           html  
    getMothers                              html  
    gxe                                     html  
    hapPower                                html  
    hapPowerAsymp                           html  
    hapRelEff                               html  
    hapRun                                  html  
    hapSim                                  html  
    haplin                                  html  
    haplinSlide                             html  
    haplinStrat                             html  
    haptable                                html  
    initParallelRun                         html  
    lineByLine                              html  
    nfam                                    html  
    nindiv                                  html  
    nsnps                                   html  
    output                                  html  
    pJohnson                                html  
    pQQ                                     html  
    pedToHaplin                             html  
    plot.haplin                             html  
    plot.haplinSlide                        html  
    plot.haplinStrat                        html  
    plot.haptable                           html  
    plotPValues                             html  
    print.haplin                            html  
    print.summary.haplin                    html  
    rbindFiles                              html  
    showGen                                 html  
    showPheno                               html  
    showSNPnames                            html  
    snpPos                                  html  
    snpPower                                html  
    snpSampleSize                           html  
    suest                                   html  
    summary.haplin                          html  
    toDataFrame                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Haplin)