* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘HLAtools’ ...
** this is package ‘HLAtools’ version ‘1.6.3’
** package ‘HLAtools’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘HLAtools’
    finding HTML links ... done
    BDstrat                                 html  
    BDtoPyPop                               html  
    GIANT                                   html  
    GLSC.ex                                 html  
    GLStoUNI                                html  
    GLV                                     html  
    GLV2                                    html  
    GLVhelper                               html  
    GLstring.ex                             html  
    GLtoUN                                  html  
    GLupdate                                html  
    GLvalidate                              html  
    HLAatlas                                html  
    HLAgazetteer                            html  
    IMGTHLAGeneTypes                        html  
    UNIFORMAT.example                       html  
    UNItoGLS                                html  
    UNtoGL                                  html  
    addCodonLine                            html  
    alignmentFull                           html  
    alignmentSearch                         html  
    alleleListHistory                       html  
    alleleTrim                              html  
    atlasFull                               html  
    atlasMaker                              html  
    buildAlignments                         html  
    buildGazetteer                          html  
    buildIMGTHLAGeneTypes                   html  
    checkAlignType                          html  
    checkSource                             html  
    checkVersion                            html  
    checkgDNAstart                          html  
    compareSequences                        html  
    convertAny                              html  
    countSpaces                             html  
    customAlign                             html  
    expandVersion                           html  
    ffN                                     html  
    formatHead                              html  
    fragmentFeatureNames                    html  
    getAlignmentNames                       html  
    getField                                html  
    getLatestVersion                        html  
    motifMatch                              html  
    multiAlign                              html  
    multiAlleleTrim                         html  
    multiGLStoUNI                           html  
    multiLocusValidation                    html  
    multiQueryRelease                       html  
    multiSearch                             html  
    multiTranslateGLstring                  html  
    multiUNItoGLS                           html  
    multiUpdateGL                           html  
    numFields                               html  
    parseAlignmentHead                      html  
    posSort                                 html  
    pypopHeaders                            html  
    queryPositions                          html  
    queryRelease                            html  
    redec                                   html  
    relRisk                                 html  
    repoVersion                             html  
    sHLAdata                                html  
    squashVersion                           html  
    translateAllele                         html  
    translateGLstring                       html  
    typeToSource                            html  
    uniAlign                                html  
    uniSearch                               html  
    updateAll                               html  
    updateAlleleListHistory                 html  
    updateGL                                html  
    validateAllele                          html  
    validateGLstring                        html  
    validateLocus                           html  
    validateMotif                           html  
    validatePositions                       html  
    validateUniformat                       html  
    validateVersion                         html  
    variantTable                            html  
    verifyAllele                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (HLAtools)