* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘HDXBoxeR’ ...
** package ‘HDXBoxeR’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘HDXBoxeR’
finding HTML links ... done
CI_2pts html
CI_single html
CI_tc html
CI_tp html
all_summary html
arg_UN_FD html
arg_df html
arguments_call1 html
arguments_call2 html
arguments_call3 html
av_tc html
av_tp html
ave_timepoint html
average_timecourse html
backHX_calculations html
boxplot_tp html
color_ranges_Blue_Red_heat_map html
color_ranges_Spectral html
coverage_residue html
deuteration_woods_timecourse html
deuteration_woods_timepoints html
dif_ave html
dif_tp html
dif_tp_proc html
duplicate_sets html
extreme_input_gap html
extreme_input_undeut html
general_info html
getCoords1 html
heat_map_tc html
heat_map_tp html
heat_map_tp_maxuptake html
heat_map_tp_maxuptake_proc html
heat_map_tp_proc html
is.nan.data.frame html
lab_dif html
lab_dif_proc html
lab_vol html
legend_heat_map html
legend_heat_map_tc html
legend_heat_map_timecourse html
legend_heat_map_tp html
legend_heat_map_tp_proc html
legend_nm_bottom html
legend_raw_ave html
legend_raw_ave_proc html
legend_raw_ave_tc html
legend_sig_peptides html
legend_states_PerD_bottom html
legend_tc_bottom html
nb_exch_deut html
nm_states html
output_FD html
output_FD_proc html
output_UD html
output_UD_proc html
output_prep html
output_tc html
output_tp html
pallette_legend html
pallette_ll html
peptide_pv_tp html
peptide_pv_tp_proc html
pl_gen_ch2 html
pl_gen_uptake html
plot_heat_map_max_uptake_tp html
plot_heat_map_max_uptake_tp_proc html
plot_heat_map_tc html
plot_heat_map_tp html
plot_heat_map_tp_proc html
plot_peptide_sig_tp html
plot_peptide_sig_tp_proc html
plots_av_tcourse html
plots_av_tp html
plots_av_tp_proc html
plots_diff_tp html
plots_diff_tp_proc html
plots_vol_tp html
ppar html
pparLM html
ppar_bottom_legend html
ppar_wider html
prep_timecourse_plot_ave html
prep_timecourse_plot_sd html
pv_timecourse html
pv_timepoint html
pymol_script_average_residue html
pymol_script_significant_peptide html
pymol_script_significant_peptide_proc html
pymol_script_significant_residue html
pymol_script_significant_residue_proc html
pymol_str html
qpcr.cbind.na html
ranges_function html
ranges_function_tc html
rbind_na html
reset_par html
robot_2states_indexes html
robot_indexes html
robot_indexes_df html
robot_plot_All html
sd_timecourse html
sd_timecourse_proc html
sd_timepoint html
select_indices html
significant_peptide_uptake html
summary_sd_CI html
uptake_plots html
verbose_timecourse_output html
verbose_timepoint_output html
vol_tp html
woods_CI_plot html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (HDXBoxeR)