• using R version 4.5.2 Patched (2026-01-05 r89280)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-14 (Debian 14.3.0-10) 14.3.0     GNU Fortran (Debian 14.3.0-10) 14.3.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8
• checking for file ‘GPCERF/DESCRIPTION’ ... OK
• this is package ‘GPCERF’ version ‘0.2.4’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘GPCERF’ can be installed ... OK See the install log for details.
• used C++ compiler: ‘g++-14 (Debian 14.3.0-10) 14.3.0’
• checking C++ specification ... OK
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [3s/4s] OK
• checking whether the package can be loaded with stated dependencies ... [3s/4s] OK
• checking whether the package can be unloaded cleanly ... [3s/4s] OK
• checking whether the namespace can be loaded with stated dependencies ... [3s/4s] OK
• checking whether the namespace can be unloaded cleanly ... [3s/4s] OK
• checking loading without being on the library search path ... [3s/4s] OK
• checking whether startup messages can be suppressed ... [3s/4s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [19s/22s] OK
• checking Rd files ... [0s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking use of PKG_*FLAGS in Makefiles ... OK
• checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [4s/5s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [84s/152s] ERROR   Running ‘testthat.R’ [83s/152s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > library(testthat)   > library(GPCERF)   >   > test_check("GPCERF")   2026-01-07 05:52:14.359857 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ...   Loading required package: nnls   Saving _problems/test-compute_deriv_nn-21.R   2026-01-07 05:52:20.045834 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ...   Saving _problems/test-compute_deriv_weights_gp-17.R   2026-01-07 05:52:25.392892 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ...   Saving _problems/test-compute_m_sigma-32.R   2026-01-07 05:52:34.357755 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ...   2026-01-07 05:52:39.072313 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ...   2026-01-07 05:52:43.563875 gimli2 3383799 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...   starting worker pid=3394364 on localhost:11956 at 05:52:43.935   2026-01-07 05:52:47.861479 gimli2 3383799 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.297 s.   2026-01-07 05:52:47.951594 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ...   2026-01-07 05:52:52.307539 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ...   2026-01-07 05:52:57.765159 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ...   Saving _problems/test-compute_weight_gp-49.R   2026-01-07 05:53:03.313407 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ...   2026-01-07 05:53:08.207243 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32   2026-01-07 05:53:12.353824 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ...   2026-01-07 05:53:15.707112 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32   2026-01-07 05:53:15.73402 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ...   2026-01-07 05:53:20.245301 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32   2026-01-07 05:53:20.276569 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32   2026-01-07 05:53:20.297124 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32   2026-01-07 05:53:20.33072 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32   2026-01-07 05:53:20.354787 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32   2026-01-07 05:53:20.388278 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32   2026-01-07 05:53:20.429523 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32   2026-01-07 05:53:20.471643 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ...   2026-01-07 05:53:24.65668 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32   starting worker pid=3404209 on localhost:11956 at 05:53:24.972   starting worker pid=3404208 on localhost:11956 at 05:53:25.098   2026-01-07 05:53:33.402274 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ...   2026-01-07 05:53:38.005343 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32   2026-01-07 05:53:38.013165 gimli2 3383799 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...   2026-01-07 05:53:38.020826 gimli2 3383799 GPCERF find_optimal_nn INFO: Started finding optimal values ...   starting worker pid=3407430 on localhost:11956 at 05:53:38.423   2026-01-07 05:53:43.297664 gimli2 3383799 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 5.27500000000001 s.} ...   2026-01-07 05:53:43.300836 gimli2 3383799 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...   starting worker pid=3408703 on localhost:11956 at 05:53:43.714   2026-01-07 05:53:47.290467 gimli2 3383799 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.98899999999999 s.   2026-01-07 05:53:47.292852 gimli2 3383799 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...   starting worker pid=3410376 on localhost:11956 at 05:53:47.670   2026-01-07 05:53:52.94118 gimli2 3383799 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 5.64800000000001 s.   2026-01-07 05:53:52.943611 gimli2 3383799 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 14.931 s.   2026-01-07 05:53:52.948986 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32   2026-01-07 05:53:52.963566 gimli2 3383799 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...   2026-01-07 05:53:52.983352 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32   2026-01-07 05:53:52.992322 gimli2 3383799 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...   2026-01-07 05:53:53.058511 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32   2026-01-07 05:53:53.067342 gimli2 3383799 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...   2026-01-07 05:53:53.093966 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ...   2026-01-07 05:53:56.814679 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32   2026-01-07 05:53:56.827197 gimli2 3383799 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...   2026-01-07 05:53:56.852689 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32   2026-01-07 05:53:56.865293 gimli2 3383799 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...   2026-01-07 05:53:56.929239 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ...   Saving _problems/test-estimate_gps-15.R   2026-01-07 05:54:02.274351 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ...   2026-01-07 05:54:07.719117 gimli2 3383799 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...   starting worker pid=3415269 on localhost:11956 at 05:54:08.123   2026-01-07 05:54:12.190488 gimli2 3383799 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.471 s.   2026-01-07 05:54:12.192771 gimli2 3383799 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...   starting worker pid=3416351 on localhost:11956 at 05:54:12.611   2026-01-07 05:54:16.895272 gimli2 3383799 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 4.702 s.   Saving _problems/test-estimate_mean_sd_nn-37.R   2026-01-07 05:54:16.960993 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ...   2026-01-07 05:54:20.649861 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ...   2026-01-07 05:54:25.366387 gimli2 3383799 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...   starting worker pid=3419951 on localhost:11956 at 05:54:25.696   2026-01-07 05:54:29.361293 gimli2 3383799 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.995 s.   2026-01-07 05:54:29.415876 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ...   2026-01-07 05:54:34.66923 gimli2 3383799 GPCERF find_optimal_nn INFO: Started finding optimal values ...   starting worker pid=3422324 on localhost:11956 at 05:54:35.178   2026-01-07 05:54:41.229543 gimli2 3383799 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 6.55700000000002 s.} ...   [ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ──   Expected `deriv_val[1, 1]` to equal 1.558466.   Differences:     `actual`: -1.0   `expected`: 1.6      ── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ──   Expected `weights[37]` to equal 3.307249e-05.   Differences:     `actual`: -0.00011   `expected`: 0.00003      ── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ──   Expected `gp_cerf[10]` to equal 2.105425.   Differences:     `actual`: -6.1   `expected`: 2.1      ── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ─────────────   Expected `weight$weight[28]` to equal 0.0002182767.   Differences:     `actual`: 0.00000   `expected`: 0.00022      ── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ───────   Expected `gps_m$gps[4, 1]` to equal 8.74310154.   Differences:     `actual`: 7.3   `expected`: 8.7      ── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ──   Expected `val[10]` to equal 5.031225.   Differences:     `actual`: 5.067   `expected`: 5.031         [ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]   Error:   ! Test failures.   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [78s/153s] OK
• checking PDF version of manual ... [5s/6s] OK
• checking HTML version of manual ... [1s/2s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 ERROR