* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘GMCM’ ...
** package ‘GMCM’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.2.0-8) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpc6Enuj/R.INSTALL199f457d0a0759/GMCM/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c GMCM.cpp -o GMCM.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o GMCM.so GMCM.o RcppExports.o -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpc6Enuj/R.INSTALL199f457d0a0759/GMCM/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpc6Enuj/R.INSTALL199f457d0a0759/GMCM/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpc6Enuj/R.INSTALL199f457d0a0759/GMCM/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-GMCM/00new/GMCM/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘GMCM’
    finding HTML links ... done
    EMAlgorithm                             html  
    EStep                                   html  
    GMCM-package                            html  
    PseudoEMAlgorithm                       html  
    SimulateGMCMData                        html  
    Uhat                                    html  
    as.theta                                html  
    choose.theta                            html  
    classify                                html  
    colSds                                  html  
    cummean                                 html  
    dgmcm.loglik                            html  
    dmvnormal                               html  
    fit.full.GMCM                           html  
    fit.meta.GMCM                           html  
    freshVsFrozen                           html  
    full2meta                               html  
    get.IDR                                 html  
    goodness.of.fit                         html  
    is.theta                                html  
    logit                                   html  
    plot.theta                              html  
    print.theta                             html  
    rho.transform                           html  
    rtheta                                  html  
    runGMCM                                 html  
    summary.theta                           html  
    tt                                      html  
    u133VsExon                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (GMCM)