* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’ * installing *source* package ‘GHap’ ... ** package ‘GHap’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘GHap’ finding HTML links ... done anc2plink html ancmark html ancplot html ancsmooth html ancsvm html finding level-2 HTML links ... done anctest html anctrain html assoc html blockgen html blockstats html compress html exfiles html fast2phase html freq html froh html fst html getHinv html hap2plink html haplotyping html hapstats html ibd html inbcoef html karyoplot html kinship html lmm html loadhaplo html loadphase html loadplink html makefile html manhattan html oxford2phase html pedcheck html phase2plink html predictblup html profile html relfind html remlci html roh html simadmix html simmating html simpheno html slice html subset html varblup html vcf2phase html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GHap)