* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘EvoPhylo’ ...
** package ‘EvoPhylo’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘EvoPhylo’
    finding HTML links ... done
    FBD_dens_plot                           html  
    FBD_normality_plot                      html  
    FBD_reshape                             html  
    FBD_summary                             html  
    FBD_tests1                              html  
    FBD_tests2                              html  
    RateTable_Means_1p_Clades               html  
    RateTable_Means_3p_Clades               html  
    characters                              html  
    clock_reshape                           html  
    clockrate_dens_plot                     html  
    finding level-2 HTML links ... done

    clockrate_reg_plot                      html  
    clockrate_summary                       html  
    cluster_to_nexus                        html  
    combine_log                             html  
    drop.dummy.beast                        html  
    drop.dummy.mb                           html  
    get_clockrate_table_BEAST2              html  
    get_clockrate_table_MrBayes             html  
    get_gower_dist                          html  
    get_pwt_rates_BEAST2                    html  
    get_pwt_rates_MrBayes                   html  
    get_sil_widths                          html  
    make_clusters                           html  
    offset.to.dummy                         html  
    offset.to.dummy.metadata                html  
    plot_back_rates                         html  
    plot_treerates_sgn                      html  
    post_trees                              html  
    posterior1p                             html  
    posterior3p                             html  
    tree1p                                  html  
    tree3p                                  html  
    tree_clock1                             html  
    tree_clock2                             html  
    write.beast.treedata                    html  
    write_partitioned_alignments            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (EvoPhylo)