* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘EstMix’ ...
** package ‘EstMix’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.2.0-6) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpPlye1q/R.INSTALL20dfde76d880e5/EstMix/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c calcll_1d_baf.cpp -o calcll_1d_baf.o
calcll_1d_baf.cpp: In function ‘Rcpp::List calcll_1d_baf(double, double, double, double, arma::mat, arma::mat, double, int, int)’:
calcll_1d_baf.cpp:18:10: warning: variable ‘Var’ set but not used [-Wunused-but-set-variable]
   18 |   double Var;
      |          ^~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c calcll_baf.cpp -o calcll_baf.o
calcll_baf.cpp: In function ‘Rcpp::List calcll_baf(double, double, double, double, arma::mat, arma::mat, double, int, int)’:
calcll_baf.cpp:18:10: warning: variable ‘Var’ set but not used [-Wunused-but-set-variable]
   18 |   double Var;
      |          ^~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c calcll_cpp.cpp -o calcll_cpp.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c calcll_p1_cpp.cpp -o calcll_p1_cpp.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c calcll_p3.cpp -o calcll_p3.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o EstMix.so RcppExports.o calcll_1d_baf.o calcll_baf.o calcll_cpp.o calcll_p1_cpp.o calcll_p3.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpPlye1q/R.INSTALL20dfde76d880e5/EstMix/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpPlye1q/R.INSTALL20dfde76d880e5/EstMix/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpPlye1q/R.INSTALL20dfde76d880e5/EstMix/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-EstMix/00new/EstMix/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘EstMix’
    finding HTML links ... done
    calc_1d                                 html  
    calc_1d_wgs                             html  
    calc_2d                                 html  
    calc_2d_wgs                             html  
    calc_3d                                 html  
    calc_n                                  html  
    calcll_1d_baf                           html  
    calcll_baf                              html  
    calcll_cpp                              html  
    calcll_p1_cpp                           html  
    calcll_p3                               html  
    combine_close_seg                       html  
    est_mixture                             html  
    est_mixture_wgs                         html  
    example_data                            html  
    f_baf                                   html  
    get_segmentation                        html  
    get_var_tcn_baf                         html  
    mean2                                   html  
    preprocessing                           html  
    seg_eg                                  html  
    sel_scale_1d                            html  
    sel_scale_1d_wgs                        html  
    sel_scale_2d                            html  
    sel_scale_2d_wgs                        html  
    wgs_eg                                  html  
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (EstMix)