• using R version 4.4.2 Patched (2024-11-18 r87347)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-14 (Debian 14.2.0-8) 14.2.0     GNU Fortran (Debian 14.2.0-8) 14.2.0
• running under: Debian GNU/Linux trixie/sid
• using session charset: UTF-8
• checking for file ‘EHR/DESCRIPTION’ ... OK
• this is package ‘EHR’ version ‘0.4-11’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘EHR’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/1s] OK
• checking whether the package can be unloaded cleanly ... [0s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
• checking loading without being on the library search path ... [1s/1s] OK
• checking whether startup messages can be suppressed ... [1s/1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [22s/34s] OK
• checking Rd files ... [1s/1s] NOTE checkRd: (-1) build_lastdose.Rd:10: Lost braces     10 | code{build_lastdose}: build PK oral with lastdose information        | ^ checkRd: (-1) mod-internal.Rd:18: Lost braces     18 | code{colflow_mod}: build a comparison of potentially duplicate flow data        | ^ checkRd: (-1) mod-internal.Rd:21: Lost braces     21 | code{findMedFlowRow_mod}: find row numbers for matching ID and time        | ^ checkRd: (-1) mod-internal.Rd:23: Lost braces     23 | code{flowData_mod}: correct flow data        | ^ checkRd: (-1) mod-internal.Rd:25: Lost braces     25 | code{concData_mod}: correct concentration data        | ^ checkRd: (-1) mod-internal.Rd:27: Lost braces     27 | code{infusionData_mod}: combine flow and MAR data; standardize hourly rate,        | ^ checkRd: (-1) mod-internal.Rd:30: Lost braces     30 | code{resolveDoseDups_mod}: correct duplicated infusion and bolus doses        | ^ checkRd: (-1) mod-internal.Rd:32: Lost braces     32 | code{writeCheckData}        | ^ checkRd: (-1) mod-internal.Rd:34: Lost braces     34 | code{processErx}: prepare e-prescription data        | ^ checkRd: (-1) mod-internal.Rd:36: Lost braces     36 | code{processErxAddl}: additional processing, checking for connected observations        | ^ checkRd: (-1) mod-internal.Rd:38: Lost braces     38 | code{validateColumns}: check columns are in place        | ^ checkRd: (-1) mod-internal.Rd:40: Lost braces     40 | code{read}: generic read function        | ^ checkRd: (-1) mod-internal.Rd:42: Lost braces     42 | code{setDoseMar}: set unit/rate/date columns        | ^ checkRd: (-1) pk-internal.Rd:19: Lost braces     19 | code{takeClosest}: take value at nearest time        | ^ checkRd: (-1) pk-internal.Rd:22: Lost braces     22 | code{takeClosestTime}: find nearest time        | ^ checkRd: (-1) pk-internal.Rd:24: Lost braces     24 | code{daysDiff}: number of days between two dates        | ^ checkRd: (-1) pk-internal.Rd:26: Lost braces     26 | code{minDiff}: difference (in minutes) of time vector        | ^ checkRd: (-1) pk-internal.Rd:28: Lost braces     28 | code{fixDates}: add leading zeroes to date        | ^ checkRd: (-1) pk-internal.Rd:30: Lost braces     30 | code{joinFlowMar}: rbind two data sets        | ^ checkRd: (-1) pk-internal.Rd:32: Lost braces     32 | code{updateInterval_mod}: replace maxint with difference between surgery time        | ^ checkRd: (-1) pk-internal.Rd:35: Lost braces     35 | code{fix_serum_time}: create time variable        | ^ checkRd: (-1) pk-internal.Rd:37: Lost braces     37 | code{merge_by_time}: impute in x by closest time in y        | ^ checkRd: (-1) pk-internal.Rd:39: Lost braces     39 | code{merge_inf_bolus}: combine infusion and bolus into one hourly dose file        | ^ checkRd: (-1) pk-internal.Rd:41: Lost braces     41 | code{addZeroDose}: add rows of zero dose, after a gap        | ^ checkRd: (-1) pk-internal.Rd:43: Lost braces     43 | code{pkdata}        | ^
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [2s/2s] OK
• checking data for ASCII and uncompressed saves ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [15s/19s] OK Examples with CPU (user + system) or elapsed time > 5s         user system elapsed Logistf 5.06 0.437 6.723
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [141s/181s] OK
• checking PDF version of manual ... [7s/11s] OK
• checking HTML version of manual ... [2s/4s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 NOTE