* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘DGP4LCF’ ...
** package ‘DGP4LCF’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.3.0-1) 13.3.0’
make[1]: Entering directory '/tmp/RtmpMs8CYl/R.INSTALL26d3a31a565e5/DGP4LCF/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c gibbs_after_mcem_irregular_time.cpp -o gibbs_after_mcem_irregular_time.o
gibbs_after_mcem_irregular_time.cpp: In function ‘void print_irregular(std::ofstream&, arma::vec&)’:
gibbs_after_mcem_irregular_time.cpp:20:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
   20 |   for (int i = 0; i < vec.n_elem; i++)
      |                   ~~^~~~~~~~~~~~
gibbs_after_mcem_irregular_time.cpp: In function ‘void print_irregular(std::ofstream&, arma::mat&)’:
gibbs_after_mcem_irregular_time.cpp:28:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
   28 |   for (int i = 0; i < mat.n_rows; i++) // write in rows rather than write in columns
      |                   ~~^~~~~~~~~~~~
gibbs_after_mcem_irregular_time.cpp:29:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
   29 |     for (int j = 0; j < mat.n_cols; j++){
      |                     ~~^~~~~~~~~~~~
gibbs_after_mcem_irregular_time.cpp: In function ‘void print_irregular(std::ofstream&, arma::cube&)’:
gibbs_after_mcem_irregular_time.cpp:41:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
   41 |   for (int slice = 0; slice < cube.n_slices; slice++) // first fix person
      |                       ~~~~~~^~~~~~~~~~~~~~~
gibbs_after_mcem_irregular_time.cpp:42:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
   42 |     for (int col = 0; col < cube.n_cols; col++) // then column
      |                       ~~~~^~~~~~~~~~~~~
gibbs_after_mcem_irregular_time.cpp:43:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
   43 |       for (int row = 0; row < cube.n_rows; row++) // then row
      |                         ~~~~^~~~~~~~~~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c gibbs_within_mcem_irregular_time.cpp -o gibbs_within_mcem_irregular_time.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o DGP4LCF.so RcppExports.o gibbs_after_mcem_irregular_time.o gibbs_within_mcem_irregular_time.o -llapack -lblas -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpMs8CYl/R.INSTALL26d3a31a565e5/DGP4LCF/src'
make[1]: Entering directory '/tmp/RtmpMs8CYl/R.INSTALL26d3a31a565e5/DGP4LCF/src'
make[1]: Leaving directory '/tmp/RtmpMs8CYl/R.INSTALL26d3a31a565e5/DGP4LCF/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-DGP4LCF/00new/DGP4LCF/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘DGP4LCF’
    finding HTML links ... done
    DGP4LCF-package                         html  
    factor_loading_heatmap                  html  
    factor_score_trajectory                 html  
    gibbs_after_mcem_algorithm              html  
    gibbs_after_mcem_combine_chains         html  
    gibbs_after_mcem_diff_initials          html  
    gibbs_after_mcem_load_chains            html  
    mcem_algorithm                          html  
    mcem_cov_plot                           html  
    mcem_parameter_setup                    html  
    numerics_summary_do_not_need_alignment
                                            html  
    numerics_summary_need_alignment         html  
    sim_fcs_init                            html  
    sim_fcs_results_irregular_6_8           html  
    sim_fcs_results_regular_8               html  
    sim_fcs_truth                           html  
    subject_specific_objects                html  
    table_generator                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (DGP4LCF)