* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘CooccurrenceAffinity’ ...
** package ‘CooccurrenceAffinity’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘CooccurrenceAffinity’
    finding HTML links ... done
    AcceptAffCI                             html  
    AcceptAffin                             html  
    AlphInts                                html  
    Bisect                                  html  
    Covrg                                   html  
    CovrgPlot                               html  
    EHypMidP                                html  
    EHypQuInt                               html  
    ML.Alpha                                html  
    MaxX.Int                                html  
    MinX.Int                                html  
    affinity                                html  
    affinity2by2                            html  
    dataprep                                html  
    logLikExtHyp                            html  
    midP.EHyp                               html  
    minmaxAlpha.pFNCH                       html  
    plotgg                                  html  
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (CooccurrenceAffinity)