* using log directory ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/ClustAssess.Rcheck’
* using R version 4.4.3 RC (2025-02-20 r87839)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc-14 (Debian 14.2.0-16) 14.2.0
    GNU Fortran (Debian 14.2.0-16) 14.2.0
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘ClustAssess/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ClustAssess’ version ‘1.0.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Package suggested but not available for checking: ‘monocle3’
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ClustAssess’ can be installed ... OK
See 'https://www.r-project.org/nosvn/R.check/r-patched-linux-x86_64/ClustAssess-00install.html' for details.
* used C++ compiler: ‘g++-14 (Debian 14.2.0-16) 14.2.0’
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [2s/3s] OK
* checking whether the package can be loaded with stated dependencies ... [2s/4s] OK
* checking whether the package can be unloaded cleanly ... [3s/3s] OK
* checking whether the namespace can be loaded with stated dependencies ... [2s/3s] OK
* checking whether the namespace can be unloaded cleanly ... [3s/3s] OK
* checking loading without being on the library search path ... [2s/3s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [42s/51s] OK
* checking Rd files ... [1s/1s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking examples ... [78s/99s] OK
Examples with CPU (user + system) or elapsed time > 5s
                                                   user system elapsed
plot_n_neigh_k_correspondence                     7.774  0.193   9.137
plot_n_neigh_ecs                                  7.743  0.201   9.011
assess_nn_stability                               7.235  0.061   9.216
plot_feature_per_resolution_stability_incremental 7.107  0.109   9.267
plot_feature_overall_stability_incremental        7.150  0.013   8.938
assess_clustering_stability                       5.256  0.295   7.308
plot_feature_stability_mb_facet                   4.327  0.206   6.014
plot_feature_stability_ecs_facet                  4.305  0.099   6.570
assess_feature_stability                          4.087  0.012   5.523
plot_feature_overall_stability_boxplot            3.711  0.014   5.630
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [43s/59s] OK
  Running ‘testthat.R’ [43s/58s]
* checking PDF version of manual ... [6s/11s] OK
* checking HTML version of manual ... [2s/4s] OK
* checking for non-standard things in the check directory ... OK
* DONE
Status: 1 NOTE