- using R version 4.4.3 Patched (2025-02-28 r87922)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc-14 (Debian 14.2.0-17) 14.2.0
GNU Fortran (Debian 14.2.0-17) 14.2.0
- running under: Debian GNU/Linux trixie/sid
- using session charset: UTF-8
- checking for file ‘ClustAssess/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘ClustAssess’ version ‘1.0.0’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... NOTE
Package suggested but not available for checking: ‘monocle3’
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘ClustAssess’ can be installed ... OK
See the install log for details.
- used C++ compiler: ‘g++-14 (Debian 14.2.0-17) 14.2.0’
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [3s/3s] OK
- checking whether the package can be loaded with stated dependencies ... [2s/3s] OK
- checking whether the package can be unloaded cleanly ... [2s/3s] OK
- checking whether the namespace can be loaded with stated dependencies ... [2s/2s] OK
- checking whether the namespace can be unloaded cleanly ... [3s/3s] OK
- checking loading without being on the library search path ... [2s/3s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [43s/52s] OK
- checking Rd files ... [1s/1s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking pragmas in C/C++ headers and code ... OK
- checking compilation flags used ... OK
- checking compiled code ... OK
- checking examples ... [78s/119s] OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
plot_n_neigh_ecs 7.912 0.100 12.443
plot_n_neigh_k_correspondence 7.821 0.169 13.228
assess_nn_stability 7.265 0.047 8.997
plot_feature_per_resolution_stability_incremental 7.208 0.081 12.106
plot_feature_overall_stability_incremental 7.166 0.002 9.628
assess_clustering_stability 5.491 0.289 8.157
plot_feature_stability_mb_facet 4.350 0.148 6.899
plot_feature_stability_ecs_facet 4.260 0.042 8.084
assess_feature_stability 4.174 0.028 6.578
plot_feature_per_resolution_stability_boxplot 3.765 0.000 6.509
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [45s/79s] OK
Running ‘testthat.R’ [45s/78s]
- checking PDF version of manual ... [6s/11s] OK
- checking HTML version of manual ... [2s/5s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 NOTE