• using R version 4.4.3 Patched (2025-02-28 r87922)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-14 (Debian 14.2.0-17) 14.2.0     GNU Fortran (Debian 14.2.0-17) 14.2.0
• running under: Debian GNU/Linux trixie/sid
• using session charset: UTF-8
• checking for file ‘ClustAssess/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘ClustAssess’ version ‘1.0.0’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... NOTE Package suggested but not available for checking: ‘monocle3’
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘ClustAssess’ can be installed ... OK See the install log for details.
• used C++ compiler: ‘g++-14 (Debian 14.2.0-17) 14.2.0’
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [3s/3s] OK
• checking whether the package can be loaded with stated dependencies ... [2s/3s] OK
• checking whether the package can be unloaded cleanly ... [2s/3s] OK
• checking whether the namespace can be loaded with stated dependencies ... [2s/2s] OK
• checking whether the namespace can be unloaded cleanly ... [3s/3s] OK
• checking loading without being on the library search path ... [2s/3s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [43s/52s] OK
• checking Rd files ... [1s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking examples ... [78s/119s] OK Examples with CPU (user + system) or elapsed time > 5s                                                    user system elapsed plot_n_neigh_ecs 7.912 0.100 12.443 plot_n_neigh_k_correspondence 7.821 0.169 13.228 assess_nn_stability 7.265 0.047 8.997 plot_feature_per_resolution_stability_incremental 7.208 0.081 12.106 plot_feature_overall_stability_incremental 7.166 0.002 9.628 assess_clustering_stability 5.491 0.289 8.157 plot_feature_stability_mb_facet 4.350 0.148 6.899 plot_feature_stability_ecs_facet 4.260 0.042 8.084 assess_feature_stability 4.174 0.028 6.578 plot_feature_per_resolution_stability_boxplot 3.765 0.000 6.509
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [45s/79s] OK   Running ‘testthat.R’ [45s/78s]
• checking PDF version of manual ... [6s/11s] OK
• checking HTML version of manual ... [2s/5s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 NOTE