* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘CVR’ ...
** package ‘CVR’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.2.0-8) 14.2.0’
using C++ compiler: ‘g++-14 (Debian 14.2.0-8) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpqt44LA/R.INSTALL785101ddcc6b2/CVR/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c cvrsolver.cpp -o cvrsolver.o
cvrsolver.cpp: In function ‘Rcpp::List cvrsolver(arma::mat, Rcpp::List, int, double, arma::vec, std::string, Rcpp::List, std::string, Rcpp::List)’:
cvrsolver.cpp:215:3: warning: label ‘arma’ defined but not used [-Wunused-label]
  215 |   arma:vec d, s;
      |   ^~~~
In file included from /usr/include/c++/14/iostream:41,
                 from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include/RcppCommon.h:53,
                 from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25,
                 from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:29,
                 from cvrsolver.cpp:1:
In member function ‘std::basic_ostream<_CharT, _Traits>::__ostream_type& std::basic_ostream<_CharT, _Traits>::operator<<(double) [with _CharT = char; _Traits = std::char_traits<char>]’,
    inlined from ‘Rcpp::List cvrsolver(arma::mat, Rcpp::List, int, double, arma::vec, std::string, Rcpp::List, std::string, Rcpp::List)’ at cvrsolver.cpp:441:38:
/usr/include/c++/14/ostream:229:25: warning: ‘difftmp’ may be used uninitialized [-Wmaybe-uninitialized]
  229 |       { return _M_insert(__f); }
      |                ~~~~~~~~~^~~~~
cvrsolver.cpp: In function ‘Rcpp::List cvrsolver(arma::mat, Rcpp::List, int, double, arma::vec, std::string, Rcpp::List, std::string, Rcpp::List)’:
cvrsolver.cpp:216:49: note: ‘difftmp’ was declared here
  216 |   double  tmp1 = 0, tmp2 = 0, tmp3 = 0, t1, t2, difftmp;
      |                                                 ^~~~~~~
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c registerDynamicSymbol.c -o registerDynamicSymbol.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o CVR.so RcppExports.o cvrsolver.o registerDynamicSymbol.o -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpqt44LA/R.INSTALL785101ddcc6b2/CVR/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpqt44LA/R.INSTALL785101ddcc6b2/CVR/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpqt44LA/R.INSTALL785101ddcc6b2/CVR/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-CVR/00new/CVR/libs
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘CVR’
    finding HTML links ... done
    CVR-package                             html  
    CVR                                     html  
    SimulateCVR                             html  
    SparseCCA                               html  
    finding level-2 HTML links ... done

    alcohol                                 html  
    cvrsolver                               html  
    mouse                                   html  
    plot.CVR                                html  
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (CVR)