* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘COveR’ ...
** package ‘COveR’ successfully unpacked and MD5 sums checked
** using staged installation
checking for gcc... gcc-14
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc-14 accepts -g... yes
checking for gcc-14 option to enable C11 features... none needed
checking for gsl-config... /usr/bin/gsl-config
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C compiler: ‘gcc-14 (Debian 14.2.0-6) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpHUftVE/R.INSTALL2f7a7c3d20403c/COveR/src'
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c COveR-init.c -o COveR-init.o
In file included from COveR-init.c:2:
icmeans/R_icmeans.h: In function ‘R_icmeans’:
icmeans/R_icmeans.h:27:18: warning: variable ‘y’ set but not used [-Wunused-but-set-variable]
27 | unsigned n, x, y, z, nc, ns, d, im, i, j;
| ^
icmeans/R_icmeans.h:27:12: warning: variable ‘n’ set but not used [-Wunused-but-set-variable]
27 | unsigned n, x, y, z, nc, ns, d, im, i, j;
| ^
In file included from COveR-init.c:3:
ikmeans/R_ikmeans.h: In function ‘R_ikmeans’:
ikmeans/R_ikmeans.h:26:18: warning: variable ‘y’ set but not used [-Wunused-but-set-variable]
26 | unsigned n, x, y, z, nc, ns, d, im, i, j;
| ^
ikmeans/R_ikmeans.h:26:12: warning: variable ‘n’ set but not used [-Wunused-but-set-variable]
26 | unsigned n, x, y, z, nc, ns, d, im, i, j;
| ^
In file included from COveR-init.c:4:
ineokm/R_ineokm.h: In function ‘R_ineokm’:
ineokm/R_ineokm.h:27:18: warning: variable ‘y’ set but not used [-Wunused-but-set-variable]
27 | unsigned n, x, y, z, nc, ns, im, i, j;
| ^
ineokm/R_ineokm.h:27:12: warning: variable ‘n’ set but not used [-Wunused-but-set-variable]
27 | unsigned n, x, y, z, nc, ns, im, i, j;
| ^
In file included from COveR-init.c:5:
iokm/R_iokm.h: In function ‘R_iokm’:
iokm/R_iokm.h:28:18: warning: variable ‘y’ set but not used [-Wunused-but-set-variable]
28 | unsigned n, x, y, z, nc, ns, dist, algo, up, im, i, j;
| ^
iokm/R_iokm.h:28:12: warning: variable ‘n’ set but not used [-Wunused-but-set-variable]
28 | unsigned n, x, y, z, nc, ns, dist, algo, up, im, i, j;
| ^
In file included from COveR-init.c:8:
neokm/R_neokm.h: In function ‘R_neokm’:
neokm/R_neokm.h:26:12: warning: variable ‘n’ set but not used [-Wunused-but-set-variable]
26 | unsigned n, x, y, nc, ns, im, i, j;
| ^
In file included from COveR-init.c:9:
okm/okm.h: In function ‘man_compute_center’:
okm/okm.h:310:7: warning: unused variable ‘idm’ [-Wunused-variable]
310 | int idm, u = 0;
| ^~~
okm/okm.h:309:18: warning: unused variable ‘res2’ [-Wunused-variable]
309 | double res[p], res2[p];
| ^~~~
okm/okm.h:308:10: warning: unused variable ‘tmp’ [-Wunused-variable]
308 | double tmp;
| ^~~
okm/okm.h: In function ‘R_okm’:
okm/okm.h:497:10: warning: variable ‘dwss’ set but not used [-Wunused-but-set-variable]
497 | double dwss;
| ^~~~
In file included from COveR-init.c:10:
r1okm/R_r1okm.h: In function ‘R_r1okm’:
r1okm/R_r1okm.h:25:12: warning: variable ‘n’ set but not used [-Wunused-but-set-variable]
25 | unsigned n, x, y, nc, ns, im, i, j;
| ^
In file included from COveR-init.c:11:
r2okm/R_r2okm.h: In function ‘R_r2okm’:
r2okm/R_r2okm.h:25:12: warning: variable ‘n’ set but not used [-Wunused-but-set-variable]
25 | unsigned n, x, y, nc, ns, im, i, j;
| ^
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/include/Rdefines.h:41,
from icmeans/../helpers.h:5,
from icmeans/icmeans.h:4,
from icmeans/R_icmeans.h:5:
icmeans/R_icmeans.h: In function ‘R_icmeans’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include/Rinternals.h:1013:33: warning: ‘tot’ may be used uninitialized [-Wmaybe-uninitialized]
1013 | #define ScalarReal Rf_ScalarReal
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include/Rinternals.h:371:36: note: in definition of macro ‘PROTECT’
371 | #define PROTECT(s) Rf_protect(s)
| ^
icmeans/R_icmeans.h:127:18: note: in expansion of macro ‘ScalarReal’
127 | PROTECT(Rtot = ScalarReal(tot));
| ^~~~~~~~~~
icmeans/R_icmeans.h:75:10: note: ‘tot’ was declared here
75 | double tot, totwss = INFINITY;
| ^~~
In file included from ikmeans/R_ikmeans.h:5:
ikmeans/ikmeans.h: In function ‘ik_assign’:
ikmeans/ikmeans.h:36:10: warning: ‘d’ may be used uninitialized [-Wmaybe-uninitialized]
36 | if (d < min_dist) {
| ^
ikmeans/ikmeans.h:24:14: note: ‘d’ was declared here
24 | double d;
| ^
ikmeans/R_ikmeans.h: In function ‘R_ikmeans’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include/Rinternals.h:1013:33: warning: ‘tot’ may be used uninitialized [-Wmaybe-uninitialized]
1013 | #define ScalarReal Rf_ScalarReal
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include/Rinternals.h:371:36: note: in definition of macro ‘PROTECT’
371 | #define PROTECT(s) Rf_protect(s)
| ^
ikmeans/R_ikmeans.h:124:18: note: in expansion of macro ‘ScalarReal’
124 | PROTECT(Rtot = ScalarReal(tot));
| ^~~~~~~~~~
ikmeans/R_ikmeans.h:73:10: note: ‘tot’ was declared here
73 | double tot, totwss = INFINITY;
| ^~~
In file included from ineokm/R_ineokm.h:5:
ineokm/ineokm.h: In function ‘ineo_assign’:
ineokm/ineokm.h:109:11: warning: ‘i’ may be used uninitialized [-Wmaybe-uninitialized]
109 | asso[i][j] = true;
| ^
ineokm/ineokm.h:77:14: note: ‘i’ was declared here
77 | unsigned i, j;
| ^
ineokm/ineokm.h:109:14: warning: ‘j’ may be used uninitialized [-Wmaybe-uninitialized]
109 | asso[i][j] = true;
| ^
ineokm/ineokm.h:77:17: note: ‘j’ was declared here
77 | unsigned i, j;
| ^
ineokm/R_ineokm.h: In function ‘R_ineokm’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include/Rinternals.h:1013:33: warning: ‘tot’ may be used uninitialized [-Wmaybe-uninitialized]
1013 | #define ScalarReal Rf_ScalarReal
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include/Rinternals.h:371:36: note: in definition of macro ‘PROTECT’
371 | #define PROTECT(s) Rf_protect(s)
| ^
ineokm/R_ineokm.h:128:18: note: in expansion of macro ‘ScalarReal’
128 | PROTECT(Rtot = ScalarReal(tot));
| ^~~~~~~~~~
ineokm/R_ineokm.h:76:10: note: ‘tot’ was declared here
76 | double tot, totwss = INFINITY;
| ^~~
In file included from iokm/R_iokm.h:5:
iokm/iokm.h: In function ‘io_assign’:
iokm/iokm.h:77:10: warning: ‘next_new_dist’ may be used uninitialized [-Wmaybe-uninitialized]
77 | if (next_new_dist < new_dist) {
| ^
iokm/iokm.h:16:33: note: ‘next_new_dist’ was declared here
16 | double new_dist = INFINITY, next_new_dist;
| ^~~~~~~~~~~~~
iokm/R_iokm.h: In function ‘R_iokm’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include/Rinternals.h:1013:33: warning: ‘tot’ may be used uninitialized [-Wmaybe-uninitialized]
1013 | #define ScalarReal Rf_ScalarReal
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include/Rinternals.h:371:36: note: in definition of macro ‘PROTECT’
371 | #define PROTECT(s) Rf_protect(s)
| ^
iokm/R_iokm.h:130:18: note: in expansion of macro ‘ScalarReal’
130 | PROTECT(Rtot = ScalarReal(tot));
| ^~~~~~~~~~
iokm/R_iokm.h:78:10: note: ‘tot’ was declared here
78 | double tot, totwss = INFINITY;
| ^~~
In file included from neokm/R_neokm.h:5:
neokm/neokm.h: In function ‘neo_assign’:
neokm/neokm.h:101:11: warning: ‘i’ may be used uninitialized [-Wmaybe-uninitialized]
101 | asso[i][j] = true;
| ^
neokm/neokm.h:69:14: note: ‘i’ was declared here
69 | unsigned i, j;
| ^
neokm/neokm.h:101:14: warning: ‘j’ may be used uninitialized [-Wmaybe-uninitialized]
101 | asso[i][j] = true;
| ^
neokm/neokm.h:69:17: note: ‘j’ was declared here
69 | unsigned i, j;
| ^
neokm/R_neokm.h: In function ‘R_neokm’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include/Rinternals.h:1013:33: warning: ‘tot’ may be used uninitialized [-Wmaybe-uninitialized]
1013 | #define ScalarReal Rf_ScalarReal
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include/Rinternals.h:371:36: note: in definition of macro ‘PROTECT’
371 | #define PROTECT(s) Rf_protect(s)
| ^
neokm/R_neokm.h:121:18: note: in expansion of macro ‘ScalarReal’
121 | PROTECT(Rtot = ScalarReal(tot));
| ^~~~~~~~~~
neokm/R_neokm.h:72:10: note: ‘tot’ was declared here
72 | double tot, totwss = INFINITY;
| ^~~
okm/okm.h: In function ‘R_okm’:
okm/okm.h:512:6: warning: ‘method’ may be used uninitialized [-Wmaybe-uninitialized]
512 | if (method == 'e')
| ^
okm/okm.h:495:8: note: ‘method’ was declared here
495 | char method;
| ^~~~~~
r1okm/R_r1okm.h: In function ‘R_r1okm’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include/Rinternals.h:1013:33: warning: ‘tot’ may be used uninitialized [-Wmaybe-uninitialized]
1013 | #define ScalarReal Rf_ScalarReal
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include/Rinternals.h:371:36: note: in definition of macro ‘PROTECT’
371 | #define PROTECT(s) Rf_protect(s)
| ^
r1okm/R_r1okm.h:119:18: note: in expansion of macro ‘ScalarReal’
119 | PROTECT(Rtot = ScalarReal(tot));
| ^~~~~~~~~~
r1okm/R_r1okm.h:70:10: note: ‘tot’ was declared here
70 | double tot, totwss = INFINITY;
| ^~~
r2okm/R_r2okm.h: In function ‘R_r2okm’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include/Rinternals.h:1013:33: warning: ‘tot’ may be used uninitialized [-Wmaybe-uninitialized]
1013 | #define ScalarReal Rf_ScalarReal
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include/Rinternals.h:371:36: note: in definition of macro ‘PROTECT’
371 | #define PROTECT(s) Rf_protect(s)
| ^
r2okm/R_r2okm.h:119:18: note: in expansion of macro ‘ScalarReal’
119 | PROTECT(Rtot = ScalarReal(tot));
| ^~~~~~~~~~
r2okm/R_r2okm.h:70:10: note: ‘tot’ was declared here
70 | double tot, totwss = INFINITY;
| ^~~
gcc-14 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o COveR.so COveR-init.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpHUftVE/R.INSTALL2f7a7c3d20403c/COveR/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpHUftVE/R.INSTALL2f7a7c3d20403c/COveR/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpHUftVE/R.INSTALL2f7a7c3d20403c/COveR/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-COveR/00new/COveR/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘COveR’
finding HTML links ... done
as.array.interval html
as.data.frame.interval html
as.interval html
as.interval.array html
as.interval.default html
as.interval.interval html
as.interval.matrix html
as.interval.numeric html
as.matrix.interval html
as.vector.interval html
cluster_color html
degree2logical html
fuzzy_icmeans html
iaggregate html
ibind html
igenerate html
ikmeans html
ineokm html
inter_city html
inter_emotions html
inter_wine html
iokm html
is.interval html
measure html
neokm html
okm html
plot.interval html
print.icmeans html
print.ikmeans html
print.ineokm html
print.interval html
print.iokm html
print.neokm html
print.okm html
print.r1okm html
print.r2okm html
r1okm html
r2okm html
read.interval html
write.interval html
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (COveR)