* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’ * installing *source* package ‘COveR’ ... ** package ‘COveR’ successfully unpacked and MD5 sums checked ** using staged installation checking for gcc... gcc-14 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc-14 accepts -g... yes checking for gcc-14 option to enable C11 features... none needed checking for gsl-config... /usr/bin/gsl-config configure: creating ./config.status config.status: creating src/Makevars ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-6) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpHUftVE/R.INSTALL2f7a7c3d20403c/COveR/src' gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c COveR-init.c -o COveR-init.o In file included from COveR-init.c:2: icmeans/R_icmeans.h: In function ‘R_icmeans’: icmeans/R_icmeans.h:27:18: warning: variable ‘y’ set but not used [-Wunused-but-set-variable] 27 | unsigned n, x, y, z, nc, ns, d, im, i, j; | ^ icmeans/R_icmeans.h:27:12: warning: variable ‘n’ set but not used [-Wunused-but-set-variable] 27 | unsigned n, x, y, z, nc, ns, d, im, i, j; | ^ In file included from COveR-init.c:3: ikmeans/R_ikmeans.h: In function ‘R_ikmeans’: ikmeans/R_ikmeans.h:26:18: warning: variable ‘y’ set but not used [-Wunused-but-set-variable] 26 | unsigned n, x, y, z, nc, ns, d, im, i, j; | ^ ikmeans/R_ikmeans.h:26:12: warning: variable ‘n’ set but not used [-Wunused-but-set-variable] 26 | unsigned n, x, y, z, nc, ns, d, im, i, j; | ^ In file included from COveR-init.c:4: ineokm/R_ineokm.h: In function ‘R_ineokm’: ineokm/R_ineokm.h:27:18: warning: variable ‘y’ set but not used [-Wunused-but-set-variable] 27 | unsigned n, x, y, z, nc, ns, im, i, j; | ^ ineokm/R_ineokm.h:27:12: warning: variable ‘n’ set but not used [-Wunused-but-set-variable] 27 | unsigned n, x, y, z, nc, ns, im, i, j; | ^ In file included from COveR-init.c:5: iokm/R_iokm.h: In function ‘R_iokm’: iokm/R_iokm.h:28:18: warning: variable ‘y’ set but not used [-Wunused-but-set-variable] 28 | unsigned n, x, y, z, nc, ns, dist, algo, up, im, i, j; | ^ iokm/R_iokm.h:28:12: warning: variable ‘n’ set but not used [-Wunused-but-set-variable] 28 | unsigned n, x, y, z, nc, ns, dist, algo, up, im, i, j; | ^ In file included from COveR-init.c:8: neokm/R_neokm.h: In function ‘R_neokm’: neokm/R_neokm.h:26:12: warning: variable ‘n’ set but not used [-Wunused-but-set-variable] 26 | unsigned n, x, y, nc, ns, im, i, j; | ^ In file included from COveR-init.c:9: okm/okm.h: In function ‘man_compute_center’: okm/okm.h:310:7: warning: unused variable ‘idm’ [-Wunused-variable] 310 | int idm, u = 0; | ^~~ okm/okm.h:309:18: warning: unused variable ‘res2’ [-Wunused-variable] 309 | double res[p], res2[p]; | ^~~~ okm/okm.h:308:10: warning: unused variable ‘tmp’ [-Wunused-variable] 308 | double tmp; | ^~~ okm/okm.h: In function ‘R_okm’: okm/okm.h:497:10: warning: variable ‘dwss’ set but not used [-Wunused-but-set-variable] 497 | double dwss; | ^~~~ In file included from COveR-init.c:10: r1okm/R_r1okm.h: In function ‘R_r1okm’: r1okm/R_r1okm.h:25:12: warning: variable ‘n’ set but not used [-Wunused-but-set-variable] 25 | unsigned n, x, y, nc, ns, im, i, j; | ^ In file included from COveR-init.c:11: r2okm/R_r2okm.h: In function ‘R_r2okm’: r2okm/R_r2okm.h:25:12: warning: variable ‘n’ set but not used [-Wunused-but-set-variable] 25 | unsigned n, x, y, nc, ns, im, i, j; | ^ In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/include/Rdefines.h:41, from icmeans/../helpers.h:5, from icmeans/icmeans.h:4, from icmeans/R_icmeans.h:5: icmeans/R_icmeans.h: In function ‘R_icmeans’: /home/hornik/tmp/R.check/r-patched-gcc/Work/build/include/Rinternals.h:1013:33: warning: ‘tot’ may be used uninitialized [-Wmaybe-uninitialized] 1013 | #define ScalarReal Rf_ScalarReal /home/hornik/tmp/R.check/r-patched-gcc/Work/build/include/Rinternals.h:371:36: note: in definition of macro ‘PROTECT’ 371 | #define PROTECT(s) Rf_protect(s) | ^ icmeans/R_icmeans.h:127:18: note: in expansion of macro ‘ScalarReal’ 127 | PROTECT(Rtot = ScalarReal(tot)); | ^~~~~~~~~~ icmeans/R_icmeans.h:75:10: note: ‘tot’ was declared here 75 | double tot, totwss = INFINITY; | ^~~ In file included from ikmeans/R_ikmeans.h:5: ikmeans/ikmeans.h: In function ‘ik_assign’: ikmeans/ikmeans.h:36:10: warning: ‘d’ may be used uninitialized [-Wmaybe-uninitialized] 36 | if (d < min_dist) { | ^ ikmeans/ikmeans.h:24:14: note: ‘d’ was declared here 24 | double d; | ^ ikmeans/R_ikmeans.h: In function ‘R_ikmeans’: /home/hornik/tmp/R.check/r-patched-gcc/Work/build/include/Rinternals.h:1013:33: warning: ‘tot’ may be used uninitialized [-Wmaybe-uninitialized] 1013 | #define ScalarReal Rf_ScalarReal /home/hornik/tmp/R.check/r-patched-gcc/Work/build/include/Rinternals.h:371:36: note: in definition of macro ‘PROTECT’ 371 | #define PROTECT(s) Rf_protect(s) | ^ ikmeans/R_ikmeans.h:124:18: note: in expansion of macro ‘ScalarReal’ 124 | PROTECT(Rtot = ScalarReal(tot)); | ^~~~~~~~~~ ikmeans/R_ikmeans.h:73:10: note: ‘tot’ was declared here 73 | double tot, totwss = INFINITY; | ^~~ In file included from ineokm/R_ineokm.h:5: ineokm/ineokm.h: In function ‘ineo_assign’: ineokm/ineokm.h:109:11: warning: ‘i’ may be used uninitialized [-Wmaybe-uninitialized] 109 | asso[i][j] = true; | ^ ineokm/ineokm.h:77:14: note: ‘i’ was declared here 77 | unsigned i, j; | ^ ineokm/ineokm.h:109:14: warning: ‘j’ may be used uninitialized [-Wmaybe-uninitialized] 109 | asso[i][j] = true; | ^ ineokm/ineokm.h:77:17: note: ‘j’ was declared here 77 | unsigned i, j; | ^ ineokm/R_ineokm.h: In function ‘R_ineokm’: /home/hornik/tmp/R.check/r-patched-gcc/Work/build/include/Rinternals.h:1013:33: warning: ‘tot’ may be used uninitialized [-Wmaybe-uninitialized] 1013 | #define ScalarReal Rf_ScalarReal /home/hornik/tmp/R.check/r-patched-gcc/Work/build/include/Rinternals.h:371:36: note: in definition of macro ‘PROTECT’ 371 | #define PROTECT(s) Rf_protect(s) | ^ ineokm/R_ineokm.h:128:18: note: in expansion of macro ‘ScalarReal’ 128 | PROTECT(Rtot = ScalarReal(tot)); | ^~~~~~~~~~ ineokm/R_ineokm.h:76:10: note: ‘tot’ was declared here 76 | double tot, totwss = INFINITY; | ^~~ In file included from iokm/R_iokm.h:5: iokm/iokm.h: In function ‘io_assign’: iokm/iokm.h:77:10: warning: ‘next_new_dist’ may be used uninitialized [-Wmaybe-uninitialized] 77 | if (next_new_dist < new_dist) { | ^ iokm/iokm.h:16:33: note: ‘next_new_dist’ was declared here 16 | double new_dist = INFINITY, next_new_dist; | ^~~~~~~~~~~~~ iokm/R_iokm.h: In function ‘R_iokm’: /home/hornik/tmp/R.check/r-patched-gcc/Work/build/include/Rinternals.h:1013:33: warning: ‘tot’ may be used uninitialized [-Wmaybe-uninitialized] 1013 | #define ScalarReal Rf_ScalarReal /home/hornik/tmp/R.check/r-patched-gcc/Work/build/include/Rinternals.h:371:36: note: in definition of macro ‘PROTECT’ 371 | #define PROTECT(s) Rf_protect(s) | ^ iokm/R_iokm.h:130:18: note: in expansion of macro ‘ScalarReal’ 130 | PROTECT(Rtot = ScalarReal(tot)); | ^~~~~~~~~~ iokm/R_iokm.h:78:10: note: ‘tot’ was declared here 78 | double tot, totwss = INFINITY; | ^~~ In file included from neokm/R_neokm.h:5: neokm/neokm.h: In function ‘neo_assign’: neokm/neokm.h:101:11: warning: ‘i’ may be used uninitialized [-Wmaybe-uninitialized] 101 | asso[i][j] = true; | ^ neokm/neokm.h:69:14: note: ‘i’ was declared here 69 | unsigned i, j; | ^ neokm/neokm.h:101:14: warning: ‘j’ may be used uninitialized [-Wmaybe-uninitialized] 101 | asso[i][j] = true; | ^ neokm/neokm.h:69:17: note: ‘j’ was declared here 69 | unsigned i, j; | ^ neokm/R_neokm.h: In function ‘R_neokm’: /home/hornik/tmp/R.check/r-patched-gcc/Work/build/include/Rinternals.h:1013:33: warning: ‘tot’ may be used uninitialized [-Wmaybe-uninitialized] 1013 | #define ScalarReal Rf_ScalarReal /home/hornik/tmp/R.check/r-patched-gcc/Work/build/include/Rinternals.h:371:36: note: in definition of macro ‘PROTECT’ 371 | #define PROTECT(s) Rf_protect(s) | ^ neokm/R_neokm.h:121:18: note: in expansion of macro ‘ScalarReal’ 121 | PROTECT(Rtot = ScalarReal(tot)); | ^~~~~~~~~~ neokm/R_neokm.h:72:10: note: ‘tot’ was declared here 72 | double tot, totwss = INFINITY; | ^~~ okm/okm.h: In function ‘R_okm’: okm/okm.h:512:6: warning: ‘method’ may be used uninitialized [-Wmaybe-uninitialized] 512 | if (method == 'e') | ^ okm/okm.h:495:8: note: ‘method’ was declared here 495 | char method; | ^~~~~~ r1okm/R_r1okm.h: In function ‘R_r1okm’: /home/hornik/tmp/R.check/r-patched-gcc/Work/build/include/Rinternals.h:1013:33: warning: ‘tot’ may be used uninitialized [-Wmaybe-uninitialized] 1013 | #define ScalarReal Rf_ScalarReal /home/hornik/tmp/R.check/r-patched-gcc/Work/build/include/Rinternals.h:371:36: note: in definition of macro ‘PROTECT’ 371 | #define PROTECT(s) Rf_protect(s) | ^ r1okm/R_r1okm.h:119:18: note: in expansion of macro ‘ScalarReal’ 119 | PROTECT(Rtot = ScalarReal(tot)); | ^~~~~~~~~~ r1okm/R_r1okm.h:70:10: note: ‘tot’ was declared here 70 | double tot, totwss = INFINITY; | ^~~ r2okm/R_r2okm.h: In function ‘R_r2okm’: /home/hornik/tmp/R.check/r-patched-gcc/Work/build/include/Rinternals.h:1013:33: warning: ‘tot’ may be used uninitialized [-Wmaybe-uninitialized] 1013 | #define ScalarReal Rf_ScalarReal /home/hornik/tmp/R.check/r-patched-gcc/Work/build/include/Rinternals.h:371:36: note: in definition of macro ‘PROTECT’ 371 | #define PROTECT(s) Rf_protect(s) | ^ r2okm/R_r2okm.h:119:18: note: in expansion of macro ‘ScalarReal’ 119 | PROTECT(Rtot = ScalarReal(tot)); | ^~~~~~~~~~ r2okm/R_r2okm.h:70:10: note: ‘tot’ was declared here 70 | double tot, totwss = INFINITY; | ^~~ gcc-14 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o COveR.so COveR-init.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpHUftVE/R.INSTALL2f7a7c3d20403c/COveR/src' make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpHUftVE/R.INSTALL2f7a7c3d20403c/COveR/src' make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpHUftVE/R.INSTALL2f7a7c3d20403c/COveR/src' installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-COveR/00new/COveR/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘COveR’ finding HTML links ... done as.array.interval html as.data.frame.interval html as.interval html as.interval.array html as.interval.default html as.interval.interval html as.interval.matrix html as.interval.numeric html as.matrix.interval html as.vector.interval html cluster_color html degree2logical html fuzzy_icmeans html iaggregate html ibind html igenerate html ikmeans html ineokm html inter_city html inter_emotions html inter_wine html iokm html is.interval html measure html neokm html okm html plot.interval html print.icmeans html print.ikmeans html print.ineokm html print.interval html print.iokm html print.neokm html print.okm html print.r1okm html print.r2okm html r1okm html r2okm html read.interval html write.interval html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (COveR)