* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘CKMRpop’ ...
** package ‘CKMRpop’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.2.0-6) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpurDtQJ/R.INSTALL2ad44a643497b3/CKMRpop/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c dfs_find_sampled_relatives.cpp -o dfs_find_sampled_relatives.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c primary_ancestor_pairs.cpp -o primary_ancestor_pairs.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c rcpp_test.cpp -o rcpp_test.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o CKMRpop.so RcppExports.o dfs_find_sampled_relatives.o primary_ancestor_pairs.o rcpp_test.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpurDtQJ/R.INSTALL2ad44a643497b3/CKMRpop/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpurDtQJ/R.INSTALL2ad44a643497b3/CKMRpop/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpurDtQJ/R.INSTALL2ad44a643497b3/CKMRpop/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-CKMRpop/00new/CKMRpop/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘CKMRpop’
    finding HTML links ... done
    amm2tibble                              html  
    anc_match_masks                         html  
    ancestor_abbrvs                         html  
    ancestor_vectors_cpp                    html  
    basic_amm_plot                          html  
    cat_dom_relat                           html  
    compile_related_pairs                   html  
    count_and_plot_ancestry_matrices        html  
    count_and_plot_mate_distribution        html  
    downsample_pairs                        html  
    example_amms                            html  
    find_ancestors_and_relatives_of_samples
                                            html  
    gg_add_generation_bands                 html  
    gg_add_zone_perimeters                  html  
    ggplot_census_by_year_age_sex           html  
    half_first_cousin_amm                   html  
    install_spip                            html  
    int_pow2                                html  
    leslie_from_spip                        html  
    pipe                                    html  
    plot_amm_from_matrix                    html  
    plot_conn_comps                         html  
    prepare_for_dfs                         html  
    primary_ancestor_pairs                  html  
    rcpp_ancestors_and_relatives            html  
    recapture_pairs                         html  
    relationship_zone_names                 html  
    relationship_zone_perimeters            html  
    relpair_conn_comps                      html  
    run_spip                                html  
    search_down                             html  
    search_up                               html  
    slurp_spip                              html  
    species_1_life_history                  html  
    species_1_slurped_results               html  
    species_1_slurped_results_100_loci      html  
    species_1_slurped_results_1gen          html  
    species_2_life_history                  html  
    spip_binary                             html  
    spip_binary_path                        html  
    spip_exists                             html  
    spip_help                               html  
    spip_help_full                          html  
    summarize_offspring_and_mate_numbers    html  
    summarize_survival_from_census          html  
    three_pops_no_mig_slurped_results       html  
    three_pops_with_mig_slurped_results     html  
    uncooked_spaghetti                      html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (CKMRpop)