* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘CKMRpop’ ...
** package ‘CKMRpop’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.2.0-8) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmplOTeAa/R.INSTALL1b24403ade4a11/CKMRpop/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c dfs_find_sampled_relatives.cpp -o dfs_find_sampled_relatives.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c primary_ancestor_pairs.cpp -o primary_ancestor_pairs.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_test.cpp -o rcpp_test.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o CKMRpop.so RcppExports.o dfs_find_sampled_relatives.o primary_ancestor_pairs.o rcpp_test.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmplOTeAa/R.INSTALL1b24403ade4a11/CKMRpop/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmplOTeAa/R.INSTALL1b24403ade4a11/CKMRpop/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmplOTeAa/R.INSTALL1b24403ade4a11/CKMRpop/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-CKMRpop/00new/CKMRpop/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘CKMRpop’
finding HTML links ... done
amm2tibble html
anc_match_masks html
ancestor_abbrvs html
ancestor_vectors_cpp html
basic_amm_plot html
cat_dom_relat html
compile_related_pairs html
count_and_plot_ancestry_matrices html
count_and_plot_mate_distribution html
downsample_pairs html
example_amms html
find_ancestors_and_relatives_of_samples
html
gg_add_generation_bands html
gg_add_zone_perimeters html
ggplot_census_by_year_age_sex html
half_first_cousin_amm html
install_spip html
int_pow2 html
leslie_from_spip html
pipe html
plot_amm_from_matrix html
plot_conn_comps html
prepare_for_dfs html
primary_ancestor_pairs html
rcpp_ancestors_and_relatives html
recapture_pairs html
relationship_zone_names html
relationship_zone_perimeters html
relpair_conn_comps html
run_spip html
search_down html
search_up html
slurp_spip html
species_1_life_history html
species_1_slurped_results html
species_1_slurped_results_100_loci html
species_1_slurped_results_1gen html
species_2_life_history html
spip_binary html
spip_binary_path html
spip_exists html
spip_help html
spip_help_full html
summarize_offspring_and_mate_numbers html
summarize_survival_from_census html
three_pops_no_mig_slurped_results html
three_pops_with_mig_slurped_results html
uncooked_spaghetti html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (CKMRpop)