* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘CAESAR.Suite’ ...
** package ‘CAESAR.Suite’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.2.0-12) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp4099j8/R.INSTALL19efae17fd8d09/CAESAR.Suite/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c gene_embed.cpp -o gene_embed.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c imfactor.cpp -o imfactor.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o CAESAR.Suite.so RcppExports.o gene_embed.o imfactor.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp4099j8/R.INSTALL19efae17fd8d09/CAESAR.Suite/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp4099j8/R.INSTALL19efae17fd8d09/CAESAR.Suite/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp4099j8/R.INSTALL19efae17fd8d09/CAESAR.Suite/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-CAESAR.Suite/00new/CAESAR.Suite/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘CAESAR.Suite’
    finding HTML links ... done
    CAESAR.CTDEP                            html  
    CAESAR.RUV                              html  
    CAESAR.annotation                       html  
    CAESAR.coembedding                      html  
    CAESAR.coembedding.image                html  
    CAESAR.enrich.pathway                   html  
    CAESAR.enrich.score                     html  
    Cauchy.Combination                      html  
    CoUMAP                                  html  
    CoUMAP.plot                             html  
    Human_HK_genes                          html  
    Intsg                                   html  
    Mouse_HK_genes                          html  
    SigScore                                html  
    acc                                     html  
    add.gene.embedding                      html  
    annotation_mat                          html  
    auc                                     html  
    cellembedding_image_matrix              html  
    cellembedding_image_seurat              html  
    cellembedding_matrix                    html  
    cellembedding_seurat                    html  
    find.sig.genes                          html  
    getneighborhood_fastcpp                 html  
    marker.select                           html  
    markerList2mat                          html  
    toydata                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (CAESAR.Suite)