* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘BoomSpikeSlab’ ...
** package ‘BoomSpikeSlab’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.2.0-12) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp7pOOb7/R.INSTALL1a4f579adef34/BoomSpikeSlab/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I`/home/hornik/tmp/R.check/r-patched-gcc/Work/build/bin/Rscript -e "cat(system.file(package='Boom'))"`/include -DADD_ -DR_NO_REMAP -DRLANGUAGE -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c boom_spike_slab_init.cc -o boom_spike_slab_init.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I`/home/hornik/tmp/R.check/r-patched-gcc/Work/build/bin/Rscript -e "cat(system.file(package='Boom'))"`/include -DADD_ -DR_NO_REMAP -DRLANGUAGE -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c logit_spike_slab_wrapper.cc -o logit_spike_slab_wrapper.o
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/Models/PosteriorSamplers/Imputer.hpp:31,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/Models/Glm/PosteriorSamplers/BinomialLogitAuxmixSampler.hpp:23,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/Models/Glm/PosteriorSamplers/BinomialLogitSpikeSlabSampler.hpp:23,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/Models/Glm/PosteriorSamplers/BinomialLogitCompositeSpikeSlabSampler.hpp:22,
from logit_spike_slab_wrapper.cc:17:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/cpputil/ThreadTools.hpp: In member function ‘int BOOM::ThreadWorkerPool::number_of_joinable_threads() const’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/cpputil/ThreadTools.hpp:215:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::thread>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
215 | for (int i = 0; i < threads_.size(); ++i) {
| ~~^~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/Models/PosteriorSamplers/Imputer.hpp: In member function ‘int BOOM::ParallelLatentDataImputer::number_of_observations_managed() const’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/Models/PosteriorSamplers/Imputer.hpp:218:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<BOOM::Ptr<BOOM::LatentDataImputerWorker> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
218 | for (int i = 0; i < workers_.size(); ++i) {
| ~~^~~~~~~~~~~~~~~~~
In file included from logit_spike_slab_wrapper.cc:14:
utils.h: In instantiation of ‘void BOOM::spikeslab::InitializeCoefficients(const BOOM::Vector&, const BOOM::Vector&, BOOM::Ptr<BOOM::GlmModel>, BOOM::Ptr<Y>) [with SAMPLER = BOOM::BinomialLogitCompositeSpikeSlabSampler]’:
logit_spike_slab_wrapper.cc:95:46: required from here
95 | BOOM::spikeslab::InitializeCoefficients(
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
96 | BOOM::ToBoomVector(r_beta0),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
97 | prior.prior_inclusion_probabilities(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
98 | model,
| ~~~~~~
99 | sampler);
| ~~~~~~~~
utils.h:35:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
35 | for (int i = 0; i < initial_beta.size(); ++i) {
| ~~^~~~~~~~~~~~~~~~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I`/home/hornik/tmp/R.check/r-patched-gcc/Work/build/bin/Rscript -e "cat(system.file(package='Boom'))"`/include -DADD_ -DR_NO_REMAP -DRLANGUAGE -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c mlm_spike_slab_wrapper.cc -o mlm_spike_slab_wrapper.o
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/Models/PosteriorSamplers/Imputer.hpp:31,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/Models/Glm/PosteriorSamplers/MLVS_data_imputer.hpp:26,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/Models/Glm/PosteriorSamplers/MLVS.hpp:23,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/Models/Glm/PosteriorSamplers/MultinomialLogitCompositeSpikeSlabSampler.hpp:24,
from mlm_spike_slab_wrapper.cc:2:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/cpputil/ThreadTools.hpp: In member function ‘int BOOM::ThreadWorkerPool::number_of_joinable_threads() const’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/cpputil/ThreadTools.hpp:215:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::thread>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
215 | for (int i = 0; i < threads_.size(); ++i) {
| ~~^~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/Models/PosteriorSamplers/Imputer.hpp: In member function ‘int BOOM::ParallelLatentDataImputer::number_of_observations_managed() const’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/Models/PosteriorSamplers/Imputer.hpp:218:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<BOOM::Ptr<BOOM::LatentDataImputerWorker> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
218 | for (int i = 0; i < workers_.size(); ++i) {
| ~~^~~~~~~~~~~~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I`/home/hornik/tmp/R.check/r-patched-gcc/Work/build/bin/Rscript -e "cat(system.file(package='Boom'))"`/include -DADD_ -DR_NO_REMAP -DRLANGUAGE -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c nested_regression_wrapper.cc -o nested_regression_wrapper.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I`/home/hornik/tmp/R.check/r-patched-gcc/Work/build/bin/Rscript -e "cat(system.file(package='Boom'))"`/include -DADD_ -DR_NO_REMAP -DRLANGUAGE -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c nnet_wrapper.cc -o nnet_wrapper.o
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/Models/Nnet/GaussianFeedForwardNeuralNetwork.hpp:21,
from nnet_wrapper.cc:3:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/Models/Nnet/Nnet.hpp: In function ‘void BOOM::Nnet::to_binary(const BOOM::Vector&, std::vector<bool>&)’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/Models/Nnet/Nnet.hpp:40:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
40 | for (int i = 0; i < numeric.size(); ++i) {
| ~~^~~~~~~~~~~~~~~~
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/Models/PosteriorSamplers/Imputer.hpp:31,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/Models/Glm/PosteriorSamplers/BinomialLogitAuxmixSampler.hpp:23,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/Models/Glm/PosteriorSamplers/BinomialLogitSpikeSlabSampler.hpp:23,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/Models/Glm/PosteriorSamplers/BinomialLogitCompositeSpikeSlabSampler.hpp:22,
from nnet_wrapper.cc:11:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/cpputil/ThreadTools.hpp: In member function ‘int BOOM::ThreadWorkerPool::number_of_joinable_threads() const’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/cpputil/ThreadTools.hpp:215:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::thread>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
215 | for (int i = 0; i < threads_.size(); ++i) {
| ~~^~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/Models/PosteriorSamplers/Imputer.hpp: In member function ‘int BOOM::ParallelLatentDataImputer::number_of_observations_managed() const’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/Models/PosteriorSamplers/Imputer.hpp:218:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<BOOM::Ptr<BOOM::LatentDataImputerWorker> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
218 | for (int i = 0; i < workers_.size(); ++i) {
| ~~^~~~~~~~~~~~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I`/home/hornik/tmp/R.check/r-patched-gcc/Work/build/bin/Rscript -e "cat(system.file(package='Boom'))"`/include -DADD_ -DR_NO_REMAP -DRLANGUAGE -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c poisson_spike_slab_wrapper.cc -o poisson_spike_slab_wrapper.o
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/Models/PosteriorSamplers/Imputer.hpp:31,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/Models/Glm/PosteriorSamplers/PoissonRegressionAuxMixSampler.hpp:30,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/Models/Glm/PosteriorSamplers/PoissonRegressionSpikeSlabSampler.hpp:24,
from poisson_spike_slab_wrapper.cc:4:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/cpputil/ThreadTools.hpp: In member function ‘int BOOM::ThreadWorkerPool::number_of_joinable_threads() const’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/cpputil/ThreadTools.hpp:215:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::thread>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
215 | for (int i = 0; i < threads_.size(); ++i) {
| ~~^~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/Models/PosteriorSamplers/Imputer.hpp: In member function ‘int BOOM::ParallelLatentDataImputer::number_of_observations_managed() const’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/Models/PosteriorSamplers/Imputer.hpp:218:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<BOOM::Ptr<BOOM::LatentDataImputerWorker> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
218 | for (int i = 0; i < workers_.size(); ++i) {
| ~~^~~~~~~~~~~~~~~~~
In file included from poisson_spike_slab_wrapper.cc:16:
utils.h: In instantiation of ‘void BOOM::spikeslab::InitializeCoefficients(const BOOM::Vector&, const BOOM::Vector&, BOOM::Ptr<BOOM::GlmModel>, BOOM::Ptr<Y>) [with SAMPLER = BOOM::PoissonRegressionSpikeSlabSampler]’:
poisson_spike_slab_wrapper.cc:55:44: required from here
55 | BOOM::spikeslab::InitializeCoefficients(
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
56 | ToBoomVector(r_initial_beta),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
57 | prior_spec.spike()->prior_inclusion_probabilities(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
58 | model,
| ~~~~~~
59 | sampler);
| ~~~~~~~~
utils.h:35:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
35 | for (int i = 0; i < initial_beta.size(); ++i) {
| ~~^~~~~~~~~~~~~~~~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I`/home/hornik/tmp/R.check/r-patched-gcc/Work/build/bin/Rscript -e "cat(system.file(package='Boom'))"`/include -DADD_ -DR_NO_REMAP -DRLANGUAGE -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c probit_spike_slab_wrapper.cc -o probit_spike_slab_wrapper.o
In file included from probit_spike_slab_wrapper.cc:14:
utils.h: In instantiation of ‘void BOOM::spikeslab::InitializeCoefficients(const BOOM::Vector&, const BOOM::Vector&, BOOM::Ptr<BOOM::GlmModel>, BOOM::Ptr<Y>) [with SAMPLER = BOOM::BinomialProbitCompositeSpikeSlabSampler]’:
probit_spike_slab_wrapper.cc:80:46: required from here
80 | BOOM::spikeslab::InitializeCoefficients(
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
81 | BOOM::ToBoomVector(r_beta0),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
82 | prior.prior_inclusion_probabilities(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
83 | model,
| ~~~~~~
84 | sampler);
| ~~~~~~~~
utils.h:35:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
35 | for (int i = 0; i < initial_beta.size(); ++i) {
| ~~^~~~~~~~~~~~~~~~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I`/home/hornik/tmp/R.check/r-patched-gcc/Work/build/bin/Rscript -e "cat(system.file(package='Boom'))"`/include -DADD_ -DR_NO_REMAP -DRLANGUAGE -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c quantile_spike_wrapper.cc -o quantile_spike_wrapper.o
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/Models/PosteriorSamplers/Imputer.hpp:31,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/Models/Glm/PosteriorSamplers/QuantileRegressionPosteriorSampler.hpp:28,
from quantile_spike_wrapper.cc:4:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/cpputil/ThreadTools.hpp: In member function ‘int BOOM::ThreadWorkerPool::number_of_joinable_threads() const’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/cpputil/ThreadTools.hpp:215:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::thread>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
215 | for (int i = 0; i < threads_.size(); ++i) {
| ~~^~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/Models/PosteriorSamplers/Imputer.hpp: In member function ‘int BOOM::ParallelLatentDataImputer::number_of_observations_managed() const’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/Models/PosteriorSamplers/Imputer.hpp:218:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<BOOM::Ptr<BOOM::LatentDataImputerWorker> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
218 | for (int i = 0; i < workers_.size(); ++i) {
| ~~^~~~~~~~~~~~~~~~~
In file included from quantile_spike_wrapper.cc:13:
utils.h: In instantiation of ‘void BOOM::spikeslab::InitializeCoefficients(const BOOM::Vector&, const BOOM::Vector&, BOOM::Ptr<BOOM::GlmModel>, BOOM::Ptr<Y>) [with SAMPLER = BOOM::QuantileRegressionSpikeSlabSampler]’:
quantile_spike_wrapper.cc:50:44: required from here
50 | BOOM::spikeslab::InitializeCoefficients(
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
51 | ToBoomVector(r_initial_beta),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
52 | prior_spec.spike()->prior_inclusion_probabilities(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
53 | model,
| ~~~~~~
54 | sampler);
| ~~~~~~~~
utils.h:35:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
35 | for (int i = 0; i < initial_beta.size(); ++i) {
| ~~^~~~~~~~~~~~~~~~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I`/home/hornik/tmp/R.check/r-patched-gcc/Work/build/bin/Rscript -e "cat(system.file(package='Boom'))"`/include -DADD_ -DR_NO_REMAP -DRLANGUAGE -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c shrinkage_regression_wrapper.cc -o shrinkage_regression_wrapper.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I`/home/hornik/tmp/R.check/r-patched-gcc/Work/build/bin/Rscript -e "cat(system.file(package='Boom'))"`/include -DADD_ -DR_NO_REMAP -DRLANGUAGE -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c spike_slab_wrapper.cc -o spike_slab_wrapper.o
In file included from spike_slab_wrapper.cc:23:
utils.h: In instantiation of ‘void BOOM::spikeslab::InitializeCoefficients(const BOOM::Vector&, const BOOM::Vector&, BOOM::Ptr<BOOM::GlmModel>, BOOM::Ptr<Y>) [with SAMPLER = BOOM::BregVsSampler]’:
spike_slab_wrapper.cc:113:48: required from here
113 | BOOM::spikeslab::InitializeCoefficients(
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
114 | model->Beta(),
| ~~~~~~~~~~~~~~
115 | prior.spike()->prior_inclusion_probabilities(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
116 | model,
| ~~~~~~
117 | ssvs_sampler);
| ~~~~~~~~~~~~~
utils.h:35:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
35 | for (int i = 0; i < initial_beta.size(); ++i) {
| ~~^~~~~~~~~~~~~~~~~~~~~
utils.h: In instantiation of ‘void BOOM::spikeslab::InitializeCoefficients(const BOOM::Vector&, const BOOM::Vector&, BOOM::Ptr<BOOM::GlmModel>, BOOM::Ptr<Y>) [with SAMPLER = BOOM::AdaptiveSpikeSlabRegressionSampler]’:
spike_slab_wrapper.cc:135:48: required from here
135 | BOOM::spikeslab::InitializeCoefficients(
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
136 | model->Beta(),
| ~~~~~~~~~~~~~~
137 | prior.spike()->prior_inclusion_probabilities(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
138 | model,
| ~~~~~~
139 | ssvs_sampler);
| ~~~~~~~~~~~~~
utils.h:35:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
35 | for (int i = 0; i < initial_beta.size(); ++i) {
| ~~^~~~~~~~~~~~~~~~~~~~~
utils.h: In instantiation of ‘void BOOM::spikeslab::InitializeCoefficients(const BOOM::Vector&, const BOOM::Vector&, BOOM::Ptr<BOOM::GlmModel>, BOOM::Ptr<Y>) [with SAMPLER = BOOM::SpikeSlabDaRegressionSampler]’:
spike_slab_wrapper.cc:157:46: required from here
157 | BOOM::spikeslab::InitializeCoefficients(
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
158 | model->Beta(),
| ~~~~~~~~~~~~~~
159 | prior.spike()->prior_inclusion_probabilities(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
160 | model,
| ~~~~~~
161 | oda_sampler);
| ~~~~~~~~~~~~
utils.h:35:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
35 | for (int i = 0; i < initial_beta.size(); ++i) {
| ~~^~~~~~~~~~~~~~~~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I`/home/hornik/tmp/R.check/r-patched-gcc/Work/build/bin/Rscript -e "cat(system.file(package='Boom'))"`/include -DADD_ -DR_NO_REMAP -DRLANGUAGE -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c splines.cc -o splines.o
splines.cc: In function ‘SEXPREC* boom_spike_slab_Bspline_basis(SEXP, SEXP)’:
splines.cc:38:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
38 | for (int i = 0; i < x.size(); ++i) {
| ~~^~~~~~~~~~
splines.cc: In function ‘SEXPREC* boom_spike_slab_Mspline_basis(SEXP, SEXP)’:
splines.cc:58:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
58 | for (int i = 0; i < x.size(); ++i) {
| ~~^~~~~~~~~~
splines.cc: In function ‘SEXPREC* boom_spike_slab_Ispline_basis(SEXP, SEXP)’:
splines.cc:77:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
77 | for (int i = 0; i < x.size(); ++i) {
| ~~^~~~~~~~~~
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o BoomSpikeSlab.so boom_spike_slab_init.o logit_spike_slab_wrapper.o mlm_spike_slab_wrapper.o nested_regression_wrapper.o nnet_wrapper.o poisson_spike_slab_wrapper.o probit_spike_slab_wrapper.o quantile_spike_wrapper.o shrinkage_regression_wrapper.o spike_slab_wrapper.o splines.o /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/lib/libboom.a -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp7pOOb7/R.INSTALL1a4f579adef34/BoomSpikeSlab/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp7pOOb7/R.INSTALL1a4f579adef34/BoomSpikeSlab/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp7pOOb7/R.INSTALL1a4f579adef34/BoomSpikeSlab/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-BoomSpikeSlab/00new/BoomSpikeSlab/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘BoomSpikeSlab’
finding HTML links ... done
independent.spike.slab.prior html
independent.student.spike.slab.prior html
lm.spike html
logit.spike html
logit.zellner.prior html
mlm.spike html
mlm.spike.slab.prior html
model.matrix html
model.matrix.glm.spike html
nested.regression html
nnet html
finding level-2 HTML links ... done
partial.dependence.plot html
plot.BayesNnet html
plot.coefficients html
plot.lm.spike html
plot.lm.spike.fit html
plot.lm.spike.residuals html
plot.logit.spike html
plot.logit.spike.fit.summary html
plot.logit.spike.residuals html
plot.marginal.inclusion.probabilities html
plot.model.size html
plot.poisson.spike html
plot.qreg.spike html
poisson.spike html
poisson.zellner.prior html
predict.lm.spike html
print.summary.lm.spike html
probit.spike html
qreg.spike html
residuals.lm.spike html
shrinkage.regression html
spike.slab.glm.prior html
spike.slab.prior html
spike.slab.prior.base html
splines html
student.spike.slab.prior html
suggest.burn html
summarize_spike_slab_coefficients html
summary.lm.spike html
summary.logit.spike html
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BoomSpikeSlab)