* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘BeviMed’ ...
** package ‘BeviMed’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.2.0-16) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpOBemVq/R.INSTALL22881c603b8571/BeviMed/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c sampling.cpp -o sampling.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o BeviMed.so RcppExports.o sampling.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpOBemVq/R.INSTALL22881c603b8571/BeviMed/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpOBemVq/R.INSTALL22881c603b8571/BeviMed/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpOBemVq/R.INSTALL22881c603b8571/BeviMed/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-BeviMed/00new/BeviMed/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘BeviMed’
    finding HTML links ... done
    BeviMed-package                         html  
    CI_gamma1_evidence                      html  
    bevimed                                 html  
    bevimed_m                               html  
    bevimed_polytomous                      html  
    call_cpp                                html  
    conditional_prob_pathogenic             html  
    expected_explained                      html  
    explaining_variants                     html  
    extract_conditional_prob_pathogenic     html  
    extract_expected_explained              html  
    extract_explaining_variants             html  
    extract_gamma1_evidence                 html  
    extract_prob_association                html  
    extract_prob_pathogenic                 html  
    gamma0_evidence                         html  
    gamma1_evidence                         html  
    log_BF                                  html  
    print.BeviMed                           html  
    print.BeviMed_m                         html  
    print.BeviMed_summary                   html  
    prob_association                        html  
    prob_association_m                      html  
    prob_pathogenic                         html  
    stack_BeviMeds                          html  
    stop_chain                              html  
    subset_variants                         html  
    sum_ML_over_PP                          html  
    summary.BeviMed                         html  
    summary.BeviMed_m                       html  
    tune_proposal_sds                       html  
    tune_temperatures                       html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BeviMed)