* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘Ball’ ...
** package ‘Ball’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.2.0-1) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpILhRJT/R.INSTALLaf7373f2f557c/Ball/src'
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DR_BUILD -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c BD.c -o BD.o
BD.c: In function ‘BD’:
BD.c:196: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
196 | #pragma omp parallel
BD.c:201: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas]
201 | #pragma omp for
BD.c: In function ‘UBD’:
BD.c:285: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
285 | #pragma omp parallel
BD.c:290: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas]
290 | #pragma omp for
BD.c: In function ‘KBD’:
BD.c:684: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
684 | #pragma omp parallel
BD.c:689: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas]
689 | #pragma omp for
BD.c: In function ‘UKBD’:
BD.c:941: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
941 | #pragma omp parallel
BD.c:944: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas]
944 | #pragma omp for
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DR_BUILD -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c BI.c -o BI.o
BI.c: In function ‘BI’:
BI.c:372: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
372 | #pragma omp parallel
BI.c:376: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas]
376 | #pragma omp for
BI.c:413: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
413 | #pragma omp parallel
BI.c:417: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas]
417 | #pragma omp for
BI.c: In function ‘UBI’:
BI.c:542: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
542 | #pragma omp parallel
BI.c:547: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas]
547 | #pragma omp for
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DR_BUILD -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ball_init.c -o ball_init.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DR_BUILD -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bcor.c -o bcor.o
bcor.c: In function ‘_bcor_test’:
bcor.c:449: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
449 | #pragma omp parallel
bcor.c:456: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas]
456 | #pragma omp for
bcor.c: In function ‘_u_bcor_test’:
bcor.c:536: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
536 | #pragma omp parallel
bcor.c:545: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas]
545 | #pragma omp for
bcor.c: In function ‘_bcor_k_sample’:
bcor.c:822: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
822 | #pragma omp parallel
bcor.c:825: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas]
825 | #pragma omp for
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DR_BUILD -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bd_gwas.c -o bd_gwas.o
bd_gwas.c: In function ‘bd_gwas’:
bd_gwas.c:216: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
216 | #pragma omp parallel
bd_gwas.c:220: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas]
220 | #pragma omp for
bd_gwas.c:246:5: warning: ‘batch_num’ may be used uninitialized [-Wmaybe-uninitialized]
246 | free_int_matrix(randn_mat, batch_num, n - 1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bd_gwas.c:203:9: note: ‘batch_num’ was declared here
203 | int batch_num, fix_batch_num;
| ^~~~~~~~~
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DR_BUILD -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bdd_matrix.c -o bdd_matrix.o
bdd_matrix.c: In function ‘bdd_matrix_bias_two_group’:
bdd_matrix.c:95: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
95 | #pragma omp parallel
bdd_matrix.c:98: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas]
98 | #pragma omp for
bdd_matrix.c: In function ‘bdd_matrix_bias’:
bdd_matrix.c:162: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
162 | #pragma omp parallel
bdd_matrix.c:165: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas]
165 | #pragma omp for
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DR_BUILD -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c kbcov.c -o kbcov.o
kbcov.c: In function ‘KBCOV’:
kbcov.c:143: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
143 | #pragma omp parallel
kbcov.c:147: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas]
147 | #pragma omp for
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DR_BUILD -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c kbd.c -o kbd.o
kbd.c: In function ‘KBD3’:
kbd.c:493: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
493 | #pragma omp parallel
kbd.c:500: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas]
500 | #pragma omp for
kbd.c: In function ‘bd_gwas_screening’:
kbd.c:674: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
674 | #pragma omp parallel
kbd.c:678: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas]
678 | #pragma omp for
kbd.c:769: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
769 | #pragma omp parallel
kbd.c:775: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas]
775 | #pragma omp for
kbd.c: In function ‘bd_gwas_refining_single’:
kbd.c:957: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
957 | #pragma omp parallel
kbd.c:963: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas]
963 | #pragma omp for
kbd.c: In function ‘bd_gwas_refining’:
kbd.c:1121: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
1121 | #pragma omp parallel
kbd.c:1127: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas]
1127 | #pragma omp for
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DR_BUILD -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c surv.c -o surv.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DR_BUILD -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c utilities.c -o utilities.o
gcc-14 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o Ball.so BD.o BI.o ball_init.o bcor.o bd_gwas.o bdd_matrix.o kbcov.o kbd.o surv.o utilities.o -fopenmp -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpILhRJT/R.INSTALLaf7373f2f557c/Ball/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpILhRJT/R.INSTALLaf7373f2f557c/Ball/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpILhRJT/R.INSTALLaf7373f2f557c/Ball/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-Ball/00new/Ball/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘Ball’
finding HTML links ... done
ArcticLake html
bcorsis html
bcov html
bcov.test html
bd html
bd.gwas.test html
bd.test html
bdvmf html
genlung html
macaques html
meteorology html
nhdist html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Ball)