* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’ * installing *source* package ‘ATNr’ ... ** package ‘ATNr’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-13 (Debian 13.3.0-1) 13.3.0’ make[1]: Entering directory '/tmp/RtmpEb4UdI/R.INSTALL18c5d53d14932d/ATNr/src' g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c Scaled.cpp -o Scaled.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c Scaled_loops.cpp -o Scaled_loops.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c Unscaled.cpp -o Unscaled.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c Unscaled_loops.cpp -o Unscaled_loops.o Unscaled_loops.cpp: In constructor ‘Unscaled_loops::Unscaled_loops(int, int)’: Unscaled_loops.cpp:101:29: warning: unused variable ‘cons’ [-Wunused-variable] 101 | IntegerVector::iterator cons; | ^~~~ Unscaled_loops.cpp:102:29: warning: unused variable ‘cons2’ [-Wunused-variable] 102 | IntegerVector::iterator cons2; | ^~~~~ Unscaled_loops.cpp:103:29: warning: unused variable ‘res’ [-Wunused-variable] 103 | IntegerVector::iterator res; | ^~~ g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c Unscaled_nuts.cpp -o Unscaled_nuts.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c Unscaled_nuts_loops.cpp -o Unscaled_nuts_loops.o g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o ATNr.so RcppExports.o Scaled.o Scaled_loops.o Unscaled.o Unscaled_loops.o Unscaled_nuts.o Unscaled_nuts_loops.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR make[1]: Leaving directory '/tmp/RtmpEb4UdI/R.INSTALL18c5d53d14932d/ATNr/src' make[1]: Entering directory '/tmp/RtmpEb4UdI/R.INSTALL18c5d53d14932d/ATNr/src' make[1]: Leaving directory '/tmp/RtmpEb4UdI/R.INSTALL18c5d53d14932d/ATNr/src' installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-ATNr/00new/ATNr/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘ATNr’ finding HTML links ... done Scaled html Scaled_loops html TroLev html Unscaled html Unscaled_loops html Unscaled_nuts html Unscaled_nuts_loops html create_Lmatrix html create_matrix_parameter html create_model_Scaled html create_model_Unscaled html create_model_Unscaled_nuts html create_niche_model html dot-filter_extinct html dot-remove_Scaled html dot-remove_Unscaled html dot-remove_Unscaled_nuts html initialise_default_Scaled html initialise_default_Unscaled html initialise_default_Unscaled_nuts html is_connected html jacobian html lsoda_wrapper html plot_odeweb html remove_species html run_checks html schneider html sort_input html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ATNr)