* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘AFM’ ...
** package ‘AFM’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘AFM’
finding HTML links ... done
AFM html
finding level-2 HTML links ... done
AFMFractalDimensionAnalyser-getFractalDimensions
html
AFMImage-class html
AFMImage-extractAFMImage html
AFMImage-filterAFMImage html
AFMImage-getHolesStatistics html
AFMImage-importFromNanoscope html
AFMImage-invertBinaryAFMImage html
AFMImage-isBinary html
AFMImage-makeBinaryAFMImage html
AFMImage-multiplyHeightsAFMImage html
AFMImage-sampleAFMImage html
AFMImage-saveOnDisk html
AFMImage-simplifyAFMImage html
AFMImage3DModelAnalysis-class html
AFMImageAnalyser-class-initialize html
AFMImageAnalyser-class html
AFMImageCollagenNetwork html
AFMImageFractalDimensionMethod-class html
AFMImageFractalDimensionsAnalysis-class
html
AFMImageGaussianMixAnalysis-class html
AFMImageNetworksAnalysis-class html
AFMImageOfAluminiumInterface html
AFMImageOfNormallyDistributedHeights html
AFMImageOfOnePeak html
AFMImageOfRegularPeaks html
AFMImagePSDAnalysis-class html
AFMImagePSDSlopesAnalysis-class html
AFMImageVariogramAnalyser-calculateDirectionalVariograms
html
AFMImageVariogramAnalyser-calculateOmnidirectionalVariogram
html
AFMImageVariogramAnalyser-getAutomaticWidthForVariogramCalculation
html
AFMImageVariogramAnalysis-class html
AFMImageVariogramAnalysis-evaluateVariogramModels-method
html
AFMImageVariogramAnalysis-getDTModelEvaluation-method
html
AFMImageVariogramAnalysis-getDTModelSillRange-method
html
AFMImageVariogramAnalysis-updateProgress-method
html
AFMImageVariogramModel-class html
AFMVariogramAnalyser-getSpplotFromAFMImage
html
AFMVariogramAnalyser-saveSpplotFromAFMImage
html
AreNodesConnected html
PSD1DAgainstFrequency-methods html
PSD2DAgainstFrequency-methods html
RoughnessByLengthScale-methods html
addNode html
analyse html
calculate3DModel-methods html
calculateGaussianMixture html
calculateHolesCharacteristics html
calculateIgraph html
calculateNetworkParameters html
calculateNetworkSkeleton html
calculateNetworks-methods html
calculatePhysicalDistanceFromPath html
calculateShortestPaths html
canBeRemoved html
checkIsotropy html
checkNormality html
createGraph html
displayColoredNetworkWithVerticesSize html
displayHolesIn3D html
displayIn3D html
displaygridIgraphPlot html
displaygridIgraphPlotFromEdges html
dnormalmix html
existsEdge html
existsSegment html
exportToSTL html
fusionCloseNodes html
generateAFMImageReport html
generateCheckReport html
generatePolygonEnvelope html
generateReport html
generateReportFromNanoscopeImageDirectory
html
get3DImageFullfilename html
getAllPointsToRemove html
getAngle html
getAutoIntersectionForOmnidirectionalVariogram
html
getAutoIntersectionForRoughnessAgainstLengthscale
html
getBresenham2DSegment html
getCircleSpatialPoints html
getCoordinatesFromVertexId html
getIntersectionForRoughnessAgainstLengthscale
html
getIntersectionPointWithBorder html
getListOfDiameters html
getLogLogOmnidirectionalSlopeGraph html
getMaxCircleMatrix html
getNetworkGridLayout html
getNetworkParameters-methods html
getNyquistSpatialFrequency-methods html
getPaddedAFMImage html
getRoughnessParameters-methods html
getSurroundingVertexesList html
getTopologyAFMImage html
getTriangle html
getVertexId html
gridIgraphPlot html
identifyEdgesFromCircles html
identifyIsolatedNodes html
identifyMaxCircleRadius html
identifyNodesAndEdges html
identifyNodesWithCircles html
isAdjacentToBetterVertex html
isAngleBetweenEdgesAlwaysSuperiorToMinAngle
html
loglike.normalmix html
omniVariogramSlopeAnalysis-class html
performAllPSDCalculation html
performGaussianMixCalculation html
pnormmix html
printVariogramModelEvaluations html
putAnalysisOnDisk-methods html
putImagesFromAnalysisOnDisk html
removeLonguestEdge html
removeNode html
runAFMApp html
saveOnDiskIntersectionForRoughnessAgainstLengthscale
html
shiftFFT2D html
shiftedPSDuv html
simplifyNetwork html
thinImage html
totalRMSRoughness html
transformAFMImageForNetworkAnalysis-methods
html
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (AFM)