• using R version 4.3.1 (2023-06-16 ucrt)
• using platform: x86_64-w64-mingw32 (64-bit)
• R was compiled by     gcc.exe (GCC) 12.2.0     GNU Fortran (GCC) 12.2.0
• running under: Windows Server 2022 x64 (build 20348)
• using session charset: UTF-8
• checking for file 'zoon/DESCRIPTION' ... OK
• checking extension type ... Package
• this is package 'zoon' version '0.6.5'
• checking package namespace information ... OK
• checking package dependencies ... NOTE Package suggested but not available for checking: 'SDMTools'
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking whether package 'zoon' can be installed ... OK See the install log for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking 'build' directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [16s] OK
• checking whether the package can be loaded with stated dependencies ... [16s] OK
• checking whether the package can be unloaded cleanly ... [16s] OK
• checking whether the namespace can be loaded with stated dependencies ... [15s] OK
• checking whether the namespace can be unloaded cleanly ... [16s] OK
• checking loading without being on the library search path ... [13s] OK
• checking startup messages can be suppressed ... [15s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [39s] OK
• checking Rd files ... [1s] OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of 'data' directory ... OK
• checking data for non-ASCII characters ... [10s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from 'inst/doc' ... OK
• checking files in 'vignettes' ... OK
• checking examples ... [19s] OK
• checking for unstated dependencies in 'tests' ... OK
• checking tests ... [41s] ERROR   Running 'test-all.R' [41s] Running the tests in 'tests/test-all.R' failed. Complete output:   > Sys.setenv("R_TESTS" = "")   > library(testthat)   > test_check("zoon")   Loading required package: zoon   Loading required package: raster   Loading required package: sp   The legacy packages maptools, rgdal, and rgeos, underpinning the sp package,   which was just loaded, will retire in October 2023.   Please refer to R-spatial evolution reports for details, especially   https://r-spatial.org/r/2023/05/15/evolution4.html.   It may be desirable to make the sf package available;   package maintainers should consider adding sf to Suggests:.   The sp package is now running under evolution status 2        (status 2 uses the sf package in place of rgdal)   Please note that rgdal will be retired during October 2023,   plan transition to sf/stars/terra functions using GDAL and PROJ   at your earliest convenience.   See https://r-spatial.org/r/2023/05/15/evolution4.html and https://github.com/r-spatial/evolution   rgdal: version: 1.6-7, (SVN revision 1203)   Geospatial Data Abstraction Library extensions to R successfully loaded   Loaded GDAL runtime: GDAL 3.6.2, released 2023/01/02   Path to GDAL shared files: D:/RCompile/CRANpkg/lib/4.3/rgdal/gdal    GDAL does not use iconv for recoding strings.   GDAL binary built with GEOS: TRUE   Loaded PROJ runtime: Rel. 9.2.0, March 1st, 2023, [PJ_VERSION: 920]   Path to PROJ shared files: D:/RCompile/CRANpkg/lib/4.3/rgdal/proj   PROJ CDN enabled: FALSE   Linking to sp version:2.0-0   To mute warnings of possible GDAL/OSR exportToProj4() degradation,   use options("rgdal_show_exportToProj4_warnings"="none") before loading sp or rgdal.   Please note that 'maptools' will be retired during October 2023,   plan transition at your earliest convenience (see   https://r-spatial.org/r/2023/05/15/evolution4.html and earlier blogs   for guidance);some functionality will be moved to 'sp'.    Checking rgeos availability: FALSE   [ FAIL 4 | WARN 72 | SKIP 31 | PASS 192 ]      ══ Skipped tests (31) ══════════════════════════════════════════════════════════   • On CRAN (31): 'testChangeWorkflow.R:4:3', 'testChangeWorkflow.R:32:3',     'testChangeWorkflow.R:153:3', 'testChangeWorkflow.R:230:3',     'testChangeWorkflow.R:298:3', 'testGetMaxEnt.R:6:3',     'testModuleArguments.R:4:3', 'testRerunWorkflow.R:9:3',     'testRerunWorkflow.R:29:3', 'testRerunWorkflow.R:52:3',     'testRerunWorkflow.R:99:3', 'testRerunWorkflow.R:131:3',     'testRerunWorkflow.R:163:3', 'testWholeWorkflows.R:14:3',     'testWholeWorkflows.R:47:3', 'testWholeWorkflows.R:78:3',     'testWholeWorkflows.R:109:3', 'testWholeWorkflows.R:218:3',     'testWholeWorkflows.R:260:3', 'testWholeWorkflows.R:290:3',     'testWholeWorkflows.R:426:3', 'testWholeWorkflows.R:458:3',     'testWholeWorkflows.R:525:3', 'testZoonCitation.R:4:3',     'testcall_path.R:4:3', 'testplot.zoonCitation.R:4:3',     'testplot.zoonWorkflow.r:6:3', 'testplot.zoonWorkflow.r:66:3',     'testprint.zoonWorkflow.R:4:3', 'testsummary.zoonWorkflow.R:4:3',     'testtestModule.R:4:3'      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Failure ('testTransformCRS.R:25:3'): Expected errors ────────────────────────   `zoon:::TransformCRS(occ_data_error, "+init=epsg:27700")` threw an error with unexpected message.   Expected match: "CRS provided in occurrence data"   Actual message: "source crs creation failed: Invalid PROJ string syntax"   Backtrace:       ▆    1. ├─testthat::expect_error(...) at testTransformCRS.R:25:2    2. │ └─testthat:::quasi_capture(...)    3. │ ├─testthat (local) .capture(...)    4. │ │ └─base::withCallingHandlers(...)    5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))    6. └─zoon:::TransformCRS(occ_data_error, "+init=epsg:27700")    7. ├─sp::spTransform(x = LL_points, CRSobj = CRS(ras_projection))    8. └─rgdal (local) spTransform(x = LL_points, CRSobj = CRS(ras_projection))   ── Failure ('testTransformCRS.R:29:3'): Expected errors ────────────────────────   `zoon:::TransformCRS(occ_data, "tom")` threw an error with unexpected message.   Expected match: "CRS provided in covariate data"   Actual message: "source crs creation failed: Invalid PROJ string syntax"   Backtrace:       ▆    1. ├─testthat::expect_error(...) at testTransformCRS.R:29:2    2. │ └─testthat:::quasi_capture(...)    3. │ ├─testthat (local) .capture(...)    4. │ │ └─base::withCallingHandlers(...)    5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))    6. └─zoon:::TransformCRS(occ_data, "tom")    7. ├─sp::spTransform(x = LL_points, CRSobj = CRS(ras_projection))    8. └─rgdal (local) spTransform(x = LL_points, CRSobj = CRS(ras_projection))   ── Error ('testTransformCRS.R:62:3'): occurrence data is handled as expected when CRSs vary ──   Error in `spTransform(x = LL_points, CRSobj = CRS(ras_projection))`: source crs creation failed: Invalid PROJ string syntax   Backtrace:       ▆    1. └─zoon:::TransformCRS(occ_data, "+init=epsg:4326") at testTransformCRS.R:62:2    2. ├─sp::spTransform(x = LL_points, CRSobj = CRS(ras_projection))    3. └─rgdal (local) spTransform(x = LL_points, CRSobj = CRS(ras_projection))   ── Error ('testTransformCRS.R:191:3'): Handles NA values and blanks ────────────   Error in `spTransform(x = LL_points, CRSobj = CRS(ras_projection))`: source crs creation failed: Invalid PROJ string syntax   Backtrace:       ▆    1. └─zoon:::TransformCRS(occ_data, "+init=epsg:4326") at testTransformCRS.R:191:2    2. ├─sp::spTransform(x = LL_points, CRSobj = CRS(ras_projection))    3. └─rgdal (local) spTransform(x = LL_points, CRSobj = CRS(ras_projection))      [ FAIL 4 | WARN 72 | SKIP 31 | PASS 192 ]   Error: Test failures   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in 'inst/doc' ... OK
• checking re-building of vignette outputs ... [2s] OK
• checking PDF version of manual ... [17s] OK
• checking HTML version of manual ... [5s] OK
• DONE

Status: 1 ERROR, 1 NOTE