- using R version 4.3.3 (2024-02-29 ucrt)
- using platform: x86_64-w64-mingw32 (64-bit)
- R was compiled by
gcc.exe (GCC) 12.3.0
GNU Fortran (GCC) 12.3.0
- running under: Windows Server 2022 x64 (build 20348)
- using session charset: UTF-8
- checking for file 'pollimetry/DESCRIPTION' ... OK
- checking extension type ... Package
- this is package 'pollimetry' version '1.0.1'
- checking package namespace information ... OK
- checking package dependencies ... NOTE
Package suggested but not available for checking: 'pollimetrydata'
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking whether package 'pollimetry' can be installed ... OK
See the install log for details.
- checking installed package size ... OK
- checking package directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [5s] OK
- checking whether the package can be loaded with stated dependencies ... [5s] OK
- checking whether the package can be unloaded cleanly ... [4s] OK
- checking whether the namespace can be loaded with stated dependencies ... [5s] OK
- checking whether the namespace can be unloaded cleanly ... [5s] OK
- checking loading without being on the library search path ... [5s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [12s] OK
- checking Rd files ... [1s] OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of 'data' directory ... OK
- checking data for non-ASCII characters ... [0s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking examples ... [14s] ERROR
Running examples in 'pollimetry-Ex.R' failed
The error most likely occurred in:
> ### Name: bodysize
> ### Title: Converts the intertegular distance (IT) and co-variates to body
> ### size in dry weight (mg) for bees or hoverflies.
> ### Aliases: bodysize
>
> ### ** Examples
>
> example=cbind.data.frame(IT=c(1.3,2.3),
+ Sex=c("Female","Male"),
+ Subfamily=c("Syrphinae","Eristalinae"),
+ Region=c("Australasia","Europe"),
+ Species=c("Sphaerophoria_macrogaster","Myathropa_florea"))
> bodysize(x=example,taxa="hov",type="taxo")
Loading required namespace: pollimetrydata
Failed with error: 'there is no package called 'pollimetrydata''
Downloading data from: https://github.com/liamkendall/pollimetrydata/raw/master/data/hov_tax_mod.rdata
SHA-1 hash of the downloaded data file is:
8fabe989dfed6c91d8e5834ad224ff4865b76b7f
Loading required package: rstan
Loading required package: StanHeaders
Error: package or namespace load failed for 'rstan' in .doLoadActions(where, attach):
error in load action .__A__.1 for package rstan: Rcpp::loadModule(module = "class_model_base", what = TRUE, env = ns, : Unable to load module "class_model_base": attempt to apply non-function
Error in .requirePackage(package) :
unable to find required package 'rstan'
Calls: bodysize ... .findInheritedMethods -> getClass -> getClassDef -> .requirePackage
Execution halted
- checking PDF version of manual ... [17s] OK
- checking HTML version of manual ... [2s] OK
- DONE
Status: 1 ERROR, 1 NOTE