- using R version 4.3.3 (2024-02-29 ucrt)
- using platform: x86_64-w64-mingw32 (64-bit)
- R was compiled by
gcc.exe (GCC) 12.3.0
GNU Fortran (GCC) 12.3.0
- running under: Windows Server 2022 x64 (build 20348)
- using session charset: UTF-8
- checking for file 'inlamemi/DESCRIPTION' ... OK
- checking extension type ... Package
- this is package 'inlamemi' version '1.1.0'
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... NOTE
Package suggested but not available for checking: 'INLA'
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking whether package 'inlamemi' can be installed ... OK
See the install log for details.
- checking installed package size ... OK
- checking package directory ... OK
- checking 'build' directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [1s] OK
- checking whether the package can be loaded with stated dependencies ... [1s] OK
- checking whether the package can be unloaded cleanly ... [1s] OK
- checking whether the namespace can be loaded with stated dependencies ... [1s] OK
- checking whether the namespace can be unloaded cleanly ... [2s] OK
- checking loading without being on the library search path ... [2s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [7s] OK
- checking Rd files ... [1s] OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of 'data' directory ... OK
- checking data for non-ASCII characters ... [1s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking installed files from 'inst/doc' ... OK
- checking files in 'vignettes' ... OK
- checking examples ... [2s] OK
- checking for unstated dependencies in 'tests' ... OK
- checking tests ... [3s] OK
Running 'spelling.R' [0s]
Running 'testthat.R' [3s]
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes in 'inst/doc' ... OK
- checking re-building of vignette outputs ... [13s] ERROR
Error(s) in re-building vignettes:
--- re-building 'building_models_without_inlamemi.Rmd' using rmarkdown
--- finished re-building 'building_models_without_inlamemi.Rmd'
--- re-building 'framingham_heart_study.Rmd' using rmarkdown
File figure/unnamed-chunk-6-1.png not found in resource path
Error: processing vignette 'framingham_heart_study.Rmd' failed with diagnostics:
pandoc document conversion failed with error 99
--- failed re-building 'framingham_heart_study.Rmd'
--- re-building 'modifying_default_plot.Rmd' using rmarkdown
File figure/unnamed-chunk-3-1.png not found in resource path
Error: processing vignette 'modifying_default_plot.Rmd' failed with diagnostics:
pandoc document conversion failed with error 99
--- failed re-building 'modifying_default_plot.Rmd'
--- re-building 'multiple_error_variables.Rmd' using rmarkdown
File figure/unnamed-chunk-8-1.png not found in resource path
Error: processing vignette 'multiple_error_variables.Rmd' failed with diagnostics:
pandoc document conversion failed with error 99
--- failed re-building 'multiple_error_variables.Rmd'
--- re-building 'nhanes_survival_model.Rmd' using rmarkdown
File figure/unnamed-chunk-5-1.png not found in resource path
Error: processing vignette 'nhanes_survival_model.Rmd' failed with diagnostics:
pandoc document conversion failed with error 99
--- failed re-building 'nhanes_survival_model.Rmd'
--- re-building 'simulated_examples.Rmd' using rmarkdown
File figure/unnamed-chunk-4-1.png not found in resource path
Error: processing vignette 'simulated_examples.Rmd' failed with diagnostics:
pandoc document conversion failed with error 99
--- failed re-building 'simulated_examples.Rmd'
--- re-building 'visualize_model_structure.Rmd' using rmarkdown
--- finished re-building 'visualize_model_structure.Rmd'
SUMMARY: processing the following files failed:
'framingham_heart_study.Rmd' 'modifying_default_plot.Rmd'
'multiple_error_variables.Rmd' 'nhanes_survival_model.Rmd'
'simulated_examples.Rmd'
Error: Vignette re-building failed.
Execution halted
- checking PDF version of manual ... [17s] OK
- checking HTML version of manual ... [4s] OK
- DONE
Status: 1 ERROR, 1 NOTE